Literature DB >> 27418588

The 5'UTR Intron of Arabidopsis GGT1 Aminotransferase Enhances Promoter Activity by Recruiting RNA Polymerase II.

Miriam Laxa1, Kristin Müller2, Natalie Lange2, Lennart Doering2, Jan Thomas Pruscha2, Christoph Peterhänsel2.   

Abstract

Photorespiration is essential for the detoxification of glycolate and recycling of carbon to the Calvin Benson Bassham cycle. Enzymes participating in the pathway have been identified, and investigations now focus on the regulation of photorespiration by transporters and metabolites. However, regulation of photorespiration on the gene level has not been intensively studied. Here, we show that maximum transcript abundance of Glu:glyoxylate aminotransferase 1 (GGT1) is regulated by intron-mediated enhancement (IME) of the 5' leader intron rather than by regulatory elements in the 5' upstream region. The intron is rich in CT-stretches and contains the motif TGTGATTTG that is highly similar to the IME-related motif TTNGATYTG. The GGT1 intron also confers leaf-specific expression of foreign promoters. Quantitative PCR analysis and GUS activity measurements revealed that IME of the GGT1 5'UTR intron is controlled on the transcriptional level. IME by the GGT1 5'UTR intron was at least 2-fold. Chromatin immunoprecipitation experiments showed that the abundance of RNA polymerase II binding to the intron-less construct is reduced.
© 2016 American Society of Plant Biologists. All rights reserved.

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Year:  2016        PMID: 27418588      PMCID: PMC5074633          DOI: 10.1104/pp.16.00881

Source DB:  PubMed          Journal:  Plant Physiol        ISSN: 0032-0889            Impact factor:   8.340


  61 in total

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Authors:  C R Somerville
Journal:  Plant Physiol       Date:  2001-01       Impact factor: 8.340

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Authors:  Alfred J Keys
Journal:  Photosynth Res       Date:  2006-01-14       Impact factor: 3.573

3.  Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome.

Authors:  Nathaniel D Heintzman; Rhona K Stuart; Gary Hon; Yutao Fu; Christina W Ching; R David Hawkins; Leah O Barrera; Sara Van Calcar; Chunxu Qu; Keith A Ching; Wei Wang; Zhiping Weng; Roland D Green; Gregory E Crawford; Bing Ren
Journal:  Nat Genet       Date:  2007-02-04       Impact factor: 38.330

4.  Distinct roles of the first introns on the expression of Arabidopsis profilin gene family members.

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Journal:  Plant Physiol       Date:  2005-12-16       Impact factor: 8.340

5.  Segments encoding 5'-untranslated leaders of genes for thylakoid proteins contain cis-elements essential for transcription.

Authors:  C Bolle; S Sopory; T Lübberstedt; R G Herrmann; R Oelmüller
Journal:  Plant J       Date:  1994-10       Impact factor: 6.417

6.  Splicing of the maize Sh1 first intron is essential for enhancement of gene expression, and a T-rich motif increases expression without affecting splicing.

Authors:  Maureen Clancy; L Curtis Hannah
Journal:  Plant Physiol       Date:  2002-10       Impact factor: 8.340

7.  Altered ABA, proline and hydrogen peroxide in an Arabidopsis glutamate:glyoxylate aminotransferase mutant.

Authors:  Paul E Verslues; Yong-Sig Kim; Jian-Kang Zhu
Journal:  Plant Mol Biol       Date:  2007-02-23       Impact factor: 4.076

8.  Promoter-proximal introns in Arabidopsis thaliana are enriched in dispersed signals that elevate gene expression.

Authors:  Alan B Rose; Tali Elfersi; Genis Parra; Ian Korf
Journal:  Plant Cell       Date:  2008-03-04       Impact factor: 11.277

9.  Detection of histone modifications in plant leaves.

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2.  Arabidopsis glutamate:glyoxylate aminotransferase 1 (Ler) mutants generated by CRISPR/Cas9 and their characteristics.

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Journal:  Transgenic Res       Date:  2018-02-01       Impact factor: 2.788

Review 3.  Intron-Mediated Enhancement: A Tool for Heterologous Gene Expression in Plants?

Authors:  Miriam Laxa
Journal:  Front Plant Sci       Date:  2017-01-06       Impact factor: 5.753

4.  Genome-Wide Identification and Characterization of UTR-Introns of Citrus sinensis.

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5.  Identification of cis-regulatory motifs in first introns and the prediction of intron-mediated enhancement of gene expression in Arabidopsis thaliana.

Authors:  Georg Back; Dirk Walther
Journal:  BMC Genomics       Date:  2021-05-26       Impact factor: 3.969

6.  Rosiglitazone Ameliorates Spinal Cord Injury via Inhibiting Mitophagy and Inflammation of Neural Stem Cells.

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7.  Design and Analysis of Native Photorespiration Gene Motifs of Promoter Untranslated Region Combinations Under Short Term Abiotic Stress Conditions.

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Journal:  Front Plant Sci       Date:  2022-02-16       Impact factor: 5.753

  7 in total

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