Literature DB >> 27417715

The role of electrostatic interactions in the process of diffusional encounter and docking of electron transport proteins.

I B Kovalenko1, S S Khrushchev2, V A Fedorov2, G Yu Riznichenko2, A B Rubin2.   

Abstract

Electrostatic interaction of plastocyanin and cytochrome f in the process of protein-protein complex formation was investigated by computer simulation methods. It was shown that long-range electrostatic interaction promotes energetically favorable mutual orientation of protein molecules at distances between their cofactors shorter than 5 nm. At distances shorter than 3 nm, these electrostatic interactions lead to a significantly detectable increase in the rate of convergence of the cofactors.

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Year:  2016        PMID: 27417715     DOI: 10.1134/S1607672916030066

Source DB:  PubMed          Journal:  Dokl Biochem Biophys        ISSN: 1607-6729            Impact factor:   0.788


  5 in total

1.  Electrostatic analysis and Brownian dynamics simulation of the association of plastocyanin and cytochrome f.

Authors:  F De Rienzo; R R Gabdoulline; M C Menziani; P G De Benedetti; R C Wade
Journal:  Biophys J       Date:  2001-12       Impact factor: 4.033

2.  Direct simulation of plastocyanin and cytochrome f interactions in solution.

Authors:  I B Kovalenko; A M Abaturova; P A Gromov; D M Ustinin; E A Grachev; G Yu Riznichenko; A B Rubin
Journal:  Phys Biol       Date:  2006-06-05       Impact factor: 2.583

3.  [Multiparticle computer simulation of photosynthetic electron transport in a thylakoid membrane].

Authors:  I B Kovalenko; A M Abaturov; D M Ustinin; G Iu Riznichenko; E A Grachev; A B Rubin
Journal:  Biofizika       Date:  2007 May-Jun

4.  Brownian dynamics study of the interaction between plastocyanin and cytochrome f.

Authors:  D C Pearson; E L Gross
Journal:  Biophys J       Date:  1998-12       Impact factor: 4.033

5.  Classical force field parameters for the heme prosthetic group of cytochrome c.

Authors:  Felix Autenrieth; Emad Tajkhorshid; Jerome Baudry; Zaida Luthey-Schulten
Journal:  J Comput Chem       Date:  2004-10       Impact factor: 3.376

  5 in total
  2 in total

1.  What Binds Cationic Photosensitizers Better: Brownian Dynamics Reveals Key Interaction Sites on Spike Proteins of SARS-CoV, MERS-CoV, and SARS-CoV-2.

Authors:  Vladimir Fedorov; Ekaterina Kholina; Sergei Khruschev; Ilya Kovalenko; Andrew Rubin; Marina Strakhovskaya
Journal:  Viruses       Date:  2021-08-15       Impact factor: 5.048

2.  Electrostatic Map of the SARS-CoV-2 Virion Specifies Binding Sites of the Antiviral Cationic Photosensitizer.

Authors:  Vladimir Fedorov; Ekaterina Kholina; Sergei Khruschev; Ilya Kovalenko; Andrew Rubin; Marina Strakhovskaya
Journal:  Int J Mol Sci       Date:  2022-06-30       Impact factor: 6.208

  2 in total

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