Evgenii O Fetisov1, I-Feng William Kuo2, Chris Knight3, Joost VandeVondele4, Troy Van Voorhis5, J Ilja Siepmann6. 1. Department of Chemistry and Chemical Theory Center, University of Minnesota , 207 Pleasant Street SE, Minneapolis, Minnesota 55455-0431, United States. 2. Physical and Life Sciences Directorate, Lawrence Livermore National Laboratory , Livermore, California 94550, United States. 3. Leadership Computing Facility, Argonne National Laboratory , 9700 South Cass Avenue, Argonne, Illinois 60439, United States. 4. Department of Materials, ETH Zurich , Wolfgang-Pauli-Strasse 27, 8093 Zurich, Switzerland. 5. Department of Chemistry, Massachusetts Institute of Technology , 77 Massachusetts Avenue, Building 6-229, Cambridge, Massachusetts 02139-4307, United States. 6. Department of Chemistry and Chemical Theory Center, University of Minnesota, 207 Pleasant Street SE, Minneapolis, Minnesota 55455-0431, United States; Department of Chemical Engineering and Materials Science, University of Minnesota, 421 Washington Avenue SE, Minneapolis, Minnesota 55455-0132, United States.
Abstract
Predictive modeling of reaction equilibria presents one of the grand challenges in the field of molecular simulation. Difficulties in the study of such systems arise from the need (i) to accurately model both strong, short-ranged interactions leading to the formation of chemical bonds and weak interactions arising from the environment, and (ii) to sample the range of time scales involving frequent molecular collisions, slow diffusion, and infrequent reactive events. Here we present a novel reactive first-principles Monte Carlo (RxFPMC) approach that allows for investigation of reaction equilibria without the need to prespecify a set of chemical reactions and their ideal-gas equilibrium constants. We apply RxFPMC to investigate a nitrogen/oxygen mixture at T = 3000 K and p = 30 GPa, i.e., conditions that are present in atmospheric lightning strikes and explosions. The RxFPMC simulations show that the solvation environment leads to a significantly enhanced NO concentration that reaches a maximum when oxygen is present in slight excess. In addition, the RxFPMC simulations indicate the formation of NO2 and N2O in mole fractions approaching 1%, whereas N3 and O3 are not observed. The equilibrium distributions obtained from the RxFPMC simulations agree well with those from a thermochemical computer code parametrized to experimental data.
Predictive modeling of reaction equilibria presents one of the grand challenges in the field of molecular simulation. Difficulties in the study of such systems arise from the need (i) to accurately model both strong, short-ranged interactions leading to the formation of chemical bonds and weak interactions arising from the environment, and (ii) to sample the range of time scales involving frequent molecular collisions, slow diffusion, and infrequent reactive events. Here we present a novel reactive first-principles Monte Carlo (RxFPMC) approach that allows for investigation of reaction equilibria without the need to prespecify a set of chemical reactions and their ideal-gas equilibrium constants. We apply RxFPMC to investigate a nitrogen/oxygen mixture at T = 3000 K and p = 30 GPa, i.e., conditions that are present in atmospheric lightning strikes and explosions. The RxFPMC simulations show that the solvation environment leads to a significantly enhanced NO concentration that reaches a maximum when oxygen is present in slight excess. In addition, the RxFPMC simulations indicate the formation of NO2 and N2O in mole fractions approaching 1%, whereas N3 and O3 are not observed. The equilibrium distributions obtained from the RxFPMC simulations agree well with those from a thermochemical computer code parametrized to experimental data.
Studying
the behavior of complex chemical systems undergoing various
multiphase reaction equilibria is of crucial importance in both chemistry
and chemical engineering. Fundamental understanding of system composition
and properties is critical for optimization and design of new processes
involving chemical reactions. However, accurate experimental measurements
of reaction equilibria can be challenging for extreme conditions (temperature
and pressure), hazardous compounds, or nanoconfinement. These challenges
necessitate development and improvement of predictive modeling techniques
for such reactive systems.Existing computational approaches
to study reaction equilibria
can be grouped into two general categories: static electronic structure
calculations and trajectory-based approaches.[1] Electronic structure calculations with their accurate energetics
are usually the method of choice, but difficulties arise from the
treatment of solvation environments (limited to continuum solvation
models or inclusion of a few explicit solvent molecules) and computation
of molecular partition functions when multiple conformations make
significant contributions. In the group of trajectory-based methods,
there are three approaches. Molecular dynamics (MD) methods can be
used in conjunction with a first-principles description or a reactive
force field to represent inter- and intramolecular interactions. The
main drawback of MD methods is that reactive processes along with
transfer between phases are usually associated with relatively high
free energy barriers, and, hence, the rates are often beyond accessible
time scales. Although reactive force fields[2,3] allow
one to access longer time scales than first-principles MD approaches,
the former often require explicit parametrization for new systems
to be studied.[4] Reactive Monte Carlo (RxMC)
approaches[5] can overcome the kinetic limitations
through the introduction of special RxMC moves that attempt the direct
conversion of molecular species. However, RxMC has two major drawbacks:
(i) a set of chemical reactions has to be prespecified and formation
of chemical compounds is limited to those appearing in the reaction
set, and (ii) the ratios of molecular partition functions need to
be known for all chemical reactions, but may not always be available
or applicable in condensed phases. Thermochemical kinetics simulations
evolve the system based on rates of chemical reactions that have to
be provided as input parameters and treat the environment via macroscopic
equation-of-state approaches.In this work, we present the reactive
first-principles Monte Carlo
(RxFPMC) method that combines concepts from MD and RxMC approaches.
The main idea is simple but conceptually novel in the field of MC
simulations. Every molecule in the system is viewed as an aggregate
of individual atoms and not as a single entity, and all MC moves are
performed on atoms or aggregates of atoms. That is a viewpoint also
taken by MD using a first-principles description or reactive force
fields. In RxFPMC, reactive events are sampled by special MC moves
involving the exchange of atoms between aggregates (i.e., molecules)
or the transfer of an atom from one aggregate to another. As a first
application, we chose a mixture containing dioxygen (O2), dinitrogen (N2), and other NO species. This system is an attractive
test case because, in addition to the main reaction of nitric oxide
formation (N2 + O2 ⇄ 2 NO), further oxidation
reactions (e.g., 2 NO + O2 ⇄ 2 NO2) can
take place, particularly for oxygen-rich mixtures. The N:O mixture
is especially important in atmospheric chemistry where NO formation
happens during lightning storms,[6] industrial
chemistry,[7] combustion[8,9] and
rocketry[10] sciences, and astrochemistry.[11] The new RxFPMC framework provides a consistent
approach to predict and understand the behavior of chemically reactive
systems in highly nonideal environments.
Reactive First-Principles
Monte Carlo Methodology
To provide perspective on the RxFPMC
method, we start this section
with a brief description of the RxMC method introduced in the early
1990s in three flavors by Shaw,[12] Smith
and Triska,[13] and Johnson et al.[14] The main idea behind RxMC simulations is to
introduce a new reactive move in addition to conventional MC moves
(e.g, translations and rotations of molecules). During such a reactive
move, reactant molecules are artificially converted into products
or vice versa according to stoichiometry; i.e., the number of molecules
can change through insertion/deletion of the respective molecules.
The acceptance rate for such an RxMC move is as follows:[5]where ξ is the reaction direction (+1
and −1 for forward and backward reaction, respectively); p0, V, and ν are the standard pressure, system volume, and the total change in
the number of molecules during the reaction step, respectively; K is the standard-pressure ideal-gas equilibrium constant; ΔU is the change in the potential energy caused by
the move; s, N*, and ν are the number of molecules participating
in the reaction, the number of molecules of type i prior to the reactive move, and the stoichiometric coefficient for
this molecule type, respectively. Equation requires K as an input parameter,
and its value is obtained using either known ideal-gas chemical potentials
for each molecule type (e.g., from JANAF tables[15]) or using statistical mechanics to calculate ideal-gas
molecular partition functions.[16] The reliance
on ideal-gas K values for prespecified reactions
leads to the limitations mentioned previously.The RxFPMC methodology
views a reactive system as a collection
of independent atoms (or nuclei) that can aggregate to form molecules.
To describe the energetics, we choose Kohn–Sham density functional
theory (KS-DFT) due to its robustness and speed.[17] However, switching from a molecular to an atomic description
changes the types of degrees of freedom; i.e., rotational and vibrational
degrees of freedom for molecules are converted into translational
degrees of freedom for atoms. Associated with this switch, the types
of MC moves that can be applied to the system change from a case where
translational, rotational, and conformational moves are applied on
molecules and volume changes involve scaling of center-of-mass coordinates
to one where, in the simplest form, translational moves are only applied
to atoms and volume changes involve scaling of atomic coordinates.
Similarly, the calculation of the pressure switches from molecular
virial (only intermolecular forces between molecules) to atomic virial.
Thus, a set of test simulations is performed to validate that molecular
and atomic representations yield indeed the same answer for prototypical
systems where all atoms belong to molecules. Results for this test
are described in the next section.The main challenge for RxFPMC
is to find a set of MC moves that
can efficiently sample the aforementioned clustering events which,
in turn, are chemical reactions. Over the years, various MC algorithms
have been developed for strongly aggregating systems, including algorithms
that translate or rotate all particles belonging to a cluster together
as a group[18] and that sample evaporization/condensation
events (i.e., a particle is removed or added to a cluster)[19] and even the transfer of a particle from one
cluster to another.[20] While these algorithms
were developed to deal with strongly associating molecules, they can
be also applied to individual atoms ensuring good statistical sampling.
Another useful MC move is an identity exchange of two (or more) different
chemical atoms. If the exchanged atoms belong to two different molecules,
then the result is a chemical reaction involving two reactant and
two product species. If the exchanged atoms belong to the same molecule,
then the result is an isomerization. Using configurational-bias Monte
Carlo approaches,[21] it is also possible
to adjust atomic distances (i.e., bond lengths and bend angles) during
such an exchange move or to even carry out an identity exchange involving
different numbers of atoms (e.g., an H atom could be exchanged with
a CH3 group).[22] As will be shown
in the next section, unbiased N:O atom exchange moves and translations
of individual atoms are sufficient for the NO system investigated
here.It is clear that RxFPMC overcomes the limitations of the
RxMC method
mentioned above. First, RxFPMC does not require one to specify a set
of allowed reactions due to the atomic nature of the system and sampling
of atomic aggregates is constrained only by the Boltzmann weights
of system configurations. Second, the RxFPMC methodology does not
rely on ideal-gas intramolecular partition functions that may lead
to systematic errors for highly nonideal environments where the environment
modifies the molecular partition functions (e.g., via the formation
of a hydrogen bond or strong adsorption to a substrate). However,
it needs to be emphasized that RxFPMC is designed to circumvent the
kinetic limitations characteristic to MD simulations, and, hence,
RxFPMC provides only the equilibrium distribution of reactants and
products. In addition, the present implementation samples from the
classical system partition function because including nuclear quantum
effects via path integral approaches would significantly add to the
expense. In contrast, RxMC can utilize quantum molecular partition
functions (at least for molecules with limited conformational flexibility).
Results
and Discussion
In order to demonstrate that MC sampling in
an atomic representation
yields consistent results with a molecular representation, we investigate
three types of related systems containing (system A) Nmolec diatomic molecules with harmonic bonds, (system
B) Natom= 2Nmolec atoms where each atom interacts only with its nearest neighbor through
a harmonic potential, and (system C) Natom= 2Nmolec atoms where each atom interacts
only with another specific atom in the system (not necessarily its
nearest neighbor) through a harmonic potential. In addition, each
system is probed either as an ideal gas (only harmonic bond potentials
for the diatomic and no intermolecular interactions) or as liquid
phase of dinitrogen (with additional Lennard-Jones interactions[23]). For system A, the simulations involve translational
moves applied to molecules, rotational moves around the center of
mass, conformational moves changing the bond length, and volume moves
with scaling of center of mass positions. For systems B and C, only
translational moves for individual atoms and volume moves with scaling
of atomic positions are used. The number of particles used within
the acceptance rule for volume changes is set to Nmolec for system A and to Natom for systems B and C. As can be seen from the numerical data provided
in Table , these simulations
yield molar volumes and internal energies that are statistically indistinguishable
for systems A, B, and C and independent of the initial volume used.
The small increase in the internal energy of the ideal gas from RT/2 is due to rovibrational coupling.
Table 1
Equilibrium Molar Volumes and Molar
Internal Energies for an Ideal Diatomic Gas at T =
273.15 K and p = 1 bar and for Liquid Dinitrogen
at T = 73.15 K and p = 10 bara
⟨V⟩p/RT
⟨U⟩/RT
N
Vinitialp/RT
System A
System B
System C
System A
System B
System C
IG
100
0.057
1.0004
0.9986
1.0005
0.511
0.501
0.512
100
7.16
0.9995
0.9995
1.0016
0.501
0.512
0.511
N2
1000
0.0007
0.00161
0.00172
0.00163
–2.133
–2.154
–2.154
1000
0.099
0.00153
0.00162
0.00162
–2.154
–2.164
–2.135
The subscripts denote the 95% confidence
intervals. The parameters for the harmonic potential are kf = 83 kJ mol–1 Å–2 and r0 = 1.1 Å.
The subscripts denote the 95% confidence
intervals. The parameters for the harmonic potential are kf = 83 kJ mol–1 Å–2 and r0 = 1.1 Å.Switching to the reactive NO system,
we first address whether the
RxFPMC method with the selected set of MC moves (atom identity exchanges,
atom translations, and volume exchanges) can reach equilibrium distributions
of species (independent of initial composition) and whether RxFPMC
allows for faster sampling than FPMD. In order to answer these questions,
we track the evolution of the molar fraction of NO molecules, xNO, as a function of runtime (or number of MC
cycles or MD steps). To this extent, we investigate three system compositions
for a 192-atom system (N:O ratios of 1:1, 2:1, and 5:1) with initial
configurations that contain either only N2 and O2 molecules or only NO and N2 molecules. These initial
configurations are taken from a nonreactive Monte Carlo simulation
(i.e., using a molecular representation). In the RxFPMC approach (and,
of course, also in FPMD), molecules are simply aggregates of atoms,
and we use a distance cutoff at 1.6 Å to determine whether any
two atoms belong to the same molecule (see Supporting Information for data validating this cutoff criterion).The evolutions of xNO for the 12 different
runs are illustrated in Figure . It is evident that the RxFPMC simulations rapidly converge
to equilibrium xNO values (with the highest
⟨xNO⟩ for the N:O ratio
of 1:1) irrespective of the initial speciation of the system. For
all three N:O ratios, equilibrium is reached within about 25 MC cycles
(equivalent to a total of 3500 CPU hours running on 192 cores of Intel
Haswell E5-2680v3 processors; i.e., each MC move takes on average
14 s of wallclock time). It needs to be emphasized that the relatively
similar bond lengths for N2, O2, and NO (see
below) enable a fairly high acceptance rate for the atom identity
exchanges (about 10–15%). In contrast, the six 60 ps FPMD trajectories
do not yield a single reactive event even at the rather extreme conditions
used here (T = 3000 K). Because of the high temperature,
the FPMD simulations are carried out with a time step of 0.25 fs (i.e.,
each time step takes about 6 s of wallclock time). The reason for
the wallclock time per MC move being longer than that per MD time
step is that the MC moves can lead to more significant changes of
the configuration and, hence, require more SCF steps for convergence.
Similar observations regarding the number of SCF steps have been made
previously for nonreactive first-principles MC simulations.[24,25] It should also be noted that other recent FPMD studies utilized
either a strong electric field[26] or a virtual
piston[27] to initiate reactive events.
Figure 1
Evolution
of instantaneous values for the molar fraction of nitric
oxide with runtime. The magenta, green, and blue colors denote 192-atom
systems with N:O ratios of 1:1, 2:1, and 5:1, respectively. Each RxFPMC
simulation consists of 100 MC cycles (taking a total of 14 000
CPU hours, see x-axis scale at bottom), and each
FPMD simulation covers 60 ps (taking a total of 75000 CPU hours, see x-axis scale at top). The solid lines and filled circles
correspond to RxFPMC and FPMD trajectories, respectively, that started
with all oxygen atoms being present in the form of NO molecules and
the excess nitrogen atoms in the form of N2 molecules.
The dashed lines and open circles correspond to RxFPMC and FPMD trajectories,
respectively, that started with all atoms being present in the form
of N2 and O2 molecules.
Evolution
of instantaneous values for the molar fraction of nitric
oxide with runtime. The magenta, green, and blue colors denote 192-atom
systems with N:O ratios of 1:1, 2:1, and 5:1, respectively. Each RxFPMC
simulation consists of 100 MC cycles (taking a total of 14 000
CPU hours, see x-axis scale at bottom), and each
FPMD simulation covers 60 ps (taking a total of 75000 CPU hours, see x-axis scale at top). The solid lines and filled circles
correspond to RxFPMC and FPMD trajectories, respectively, that started
with all oxygen atoms being present in the form of NO molecules and
the excess nitrogen atoms in the form of N2 molecules.
The dashed lines and open circles correspond to RxFPMC and FPMD trajectories,
respectively, that started with all atoms being present in the form
of N2 and O2 molecules.The NO formation reaction is endothermic by about 180 kJ/mol
and,
at normal conditions, the equilibrium is shifted very much to the
reactant side. In Figure , the equilibrium xNO values obtained
with various approaches are compared (numerical values are provided
in Table S1). Using ideal-gas molecular
partition functions[16] for the N2 + O2 ⇄ 2 NO reaction yields xNO values ranging from 4.1% to 5.7% for N:O ratios of
5:1 and 1:1 that, by construction, are symmetric with respect to the
oxygencontent, xO, and the N:O ratio.
In contrast, when intermolecular interactions are taken into account
with various approximations (Cheetah using an equation-of-state approach,[28,29] RxMC using a force field, and RxFPMC using KS-DFT), then the equilibrium xNO values are found to be about a factor of
5 larger than the ideal gas data. This very substantial increase is
caused by substantially stronger NO–NO interactions compared
to O2–O2 and N2–N2 interactions.[30] The stronger NO–NO
interactions are due to NO’s permanent dipole (μ = 0.16
D)[31] and higher polarizability,[32] whereas N2 and O2 possess
only permanent quadrupole moments. On average, the force-field based
RxMC simulations of Smith and Triska[13] yield
the smallest enhancement of xNO, whereas
the Cheetah thermochemical code[28,29] yields the largest
enhancement.
Figure 2
Equilibrium molar fractions of nitric oxide versus the
oxygen content
in the system. Magenta squares, blue diamonds, and orange circles
denote predictions using the Cheetah thermochemical code,[28] the force-field based RxMC data of Smith and
Triska,[13] and ratios of ideal-gas molecular
partition functions, respectively. The up, left, and right triangles
denote RxFPMC data obtained with the BLYP-D3, M06, and rVV10 functionals.
Statistical errors are smaller than the symbol size.
Equilibrium molar fractions of nitric oxide versus the
oxygencontent
in the system. Magenta squares, blue diamonds, and orange circles
denote predictions using the Cheetah thermochemical code,[28] the force-field based RxMC data of Smith and
Triska,[13] and ratios of ideal-gas molecular
partition functions, respectively. The up, left, and right triangles
denote RxFPMC data obtained with the BLYP-D3, M06, and rVV10 functionals.
Statistical errors are smaller than the symbol size.The other important feature is that the RxFPMC
simulations and
the Cheetah predictions exhibit significantly asymmetric xNO values with a larger enhancement for higher oxygencontent or smaller N:O ratio. For example, the xNO values at a 1:5 N:O ratio are larger than those at a 5:1
ratio by factors of 1.5 and 1.14 for RxFPMC and Cheetah, respectively,
whereas this factor is only 1.01 for RxMC. For the RxFPMC simulations,
the enhancement factors with respect to the ideal-gas values are monotonically
increasing and are 3.9, 4.4, 4.9, 5.4, and 5.8 for N:O ratios of 5:1,
2:1, 1:1, 1:2, and 1:5, respectively. This asymmetric enhancement
will be discussed further below.For the 1:1 N:O ratio, RxFPMC
simulations are carried out using
the BLYP-D3, M06, and rVV10 functionals. Agreement between the three
functionals is very good with xNO values
of 0.285 ± 0.003 (rVV10), 0.279 ± 0.002 (BLYP-D3), and 0.275
± 0.003 (M06). This order is also consistent with the reaction
energies obtained for isolated molecules that are +179.8, +181.2,
and +184.8 kJ/mol, respectively. These values obtained with the pseudopotential
approach of CP2K are in good agreement with those obtained from all-electron
calculations (see Table S2).One
approximation used for the RxFPMC simulations (but not for
the RxMC and Cheetah data) is that nuclear quantum effects are neglected
in the sampling. To assess the significance of this approximation,
the ideal-gas equilibrium constant is calculated using either a quantum-mechanical
or a classical-mechanical description of the vibrational partition
function. It is found that using the classical description decreases xNO by a factor of less than 1.01 (because the
zero-point energies slightly favor NO formation). That is, the neglect
of nuclear quantum effects causes a shift that is approximately similar
to the statistical error of the RxFPMC simulations. It certainly helps
that the NO system does not contain any hydrogen atoms and is studied
at high temperature.The molar fractions of the three diatomic
species are compared
in Figure . The data
for RxMC,[13] Cheetah,[28] and RxFPMC simulations are in very good agreement with
the expected shift in population from N2 being the major
species (with 0.736 ≤ xN ≤ 0.746) at the 5:1 N:O ratio to O2 being the
major species (with 0.705 ≤ xO ≤ 0.743) at the 1:5 N:O ratio. As an aside, this shift
in population away from N2 with the shortest bond length
(see below) is also reflected in a decrease of the specific density
from a value of 1194 ± 1 kg/m3 for the mixture with
the 5:1 N:O ratio to 1078 ± 1 kg/m3 for the mixture
with the 1:5 N:O ratio.
Figure 3
Equilibrium molar fractions for NO, O2, N2, NO2, and N2O obtained from
RxMC,[13] Cheetah,[28] and RxFPMC(BLYP-D3)
simulations. The upper part provides a magnified view of the molar
fractions of the two triatomic species.
Equilibrium molar fractions for NO, O2, N2, NO2, and N2O obtained from
RxMC,[13] Cheetah,[28] and RxFPMC(BLYP-D3)
simulations. The upper part provides a magnified view of the molar
fractions of the two triatomic species.Most importantly, the cluster analysis of the RxFPMC simulations
also yields small, but statistically significant molar fractions for
the NO2 and N2O triatomic molecules (see Figure and Table S1). The RxFPMC simulations do not show
dissociation into atoms nor formation of homoatomic O3 and
N3 species or species with four or more atoms. The presence
of triatomic species demonstrates that the RxFPMC simulations with
the current move set are indeed capable of generating new molecules,
whereas the RxMC simulations are limited to only those species appearing
in the reaction set (i.e., only the diatomic molecules for the NO
system). Since we do not detect significant fractions of atomic species,
the formation/destruction of the triatomic molecules involves mostly
groups of six atoms that rearrange from three diatomics to two triatomics.The Cheetah simulations also yield NO2 and N2O as the only nondiatomic species that are present in molar fractions
greater than 2 × 10–4, but much better statistics
for the thermochemical code allow for detection of O3,
O, and N species. With the exception of the oxygen-rich system (N:O
ratio of 1:5), where the xO value exceeds 10–4, all of these minor species
are found individually only in molar fractions smaller than 10–4 in the Cheetah simulations. Averaging over the five
compositions, the RxFPMC simulations yield a total molar fraction
for the two major triatomic species of 0.008 compared to a value of
0.011 for the Cheetah simulations. The RxFPMC and Cheetah simulations
also yield about five times more N2O than NO2 for the nitrogen-rich system with the N:O ratio of 5:1, and about
three times more NO2 than N2O for the oxygen-rich
system with the N:O ratio of 1:5. With regard to the two isomers possible
for the triatomic species, the RxFPMC simulations yield only the N–N–O
isomer for N2O, and the N–O–O isomer constitutes
less than 5% of the NO2 molecules; i.e., almost all are
present as the O–N–O isomer. The data for the BLYP-D3,
M06, and rVV10 functionals are in agreement with respect to the fraction
of triatomic molecules and their isomers for the 1:1 N:O mixture (see Table S1).Overall, the agreement with
the Cheetah data is very encouraging.
The present simulations of reactive equilibria are carried out at
high temperature and pressure where repulsive, first-order electrostatic,
and induction interactions between molecular species are more important
than dispersive interactions. Furthermore, the focus is on equilibrium
distributions and not on reaction rates where sampling of transition
states would be important. These factors may mask deficiencies of
the KS-DFT and also explain the good agreement for data obtained with
different functionals, whereas vapor–liquid equilibria are
known to be very sensitive to details of the electronic structure
calculations.[33]To provide an explanation
of the asymmetric molar fraction for
NO observed in the RxFPMC simulations (see Figure ), we turn our attention to microscopic-level
information that can be obtained only from the RxFPMC simulations
but not from an equation-of-state based approach. Data for the average
bond lengths of the diatomic molecules are presented in Figure . Compared to isolated molecules,
the environment provided by the highly compressed gas phase leads
to a shortening of the NO bond length by about 3%, whereas the O2 bond is lengthened by about 2%. As expected, the effect on
the N2 triple bond is very small. Taking bond length as
a proxy for bond strength, the compressed-vapor environment leads
to a stabilization of the NO radical, whereas O2 is destabilized.
This finding supports higher xNO values
for the oxygen-rich mixtures (N:O ratios of 1:2 and 1:5) than for
the corresponding nitrogen-rich mixtures. It is also consistent with
the observation that xO for
the 1:5 N:O mixture is somewhat smaller (by a factor of 1.06) than xN for the 5:1 N:O mixture. It should
also be noted that the extent of the lengthening of the O2 bond is found to decrease slightly with increasing oxygencontent.
Figure 4
Ratios
between average bond lengths of the diatomic molecules in
the bulk phase and for an isolated molecule at T =
3000 K for the five compositions studied with the BLYP-D3 functional.
Ratios
between average bond lengths of the diatomic molecules in
the bulk phase and for an isolated molecule at T =
3000 K for the five compositions studied with the BLYP-D3 functional.From an analysis of the various
radial distribution functions and
the corresponding number integrals another structural feature emerges
that supports the higher molar fraction of NO in oxygen-rich environments.
Combining data from various number integrals, the local molar fraction
enhancement can be computed that provides information on preferential
solvation. For the NO system, we find such an enhancement for the
solvation of NO molecules by O2 molecules (see Figure ). That is, the local
surrounding of an NO molecule is occupied on average by significantly
more O2 molecules than one would expect from the bulk composition
and random mixing. As for other systems,[34] this relative enhancement is largest for the O2-poor
mixture, i.e., the 5:1 N:O mixture with xO = 0.085. The enrichment is greatly diminished for the
1:5 N:O mixture with xO =
0.705 because sufficient O2 molecules are present to provide
NO’s preferred solvation environment. This local microheterogeneity
also supports the higher xNO values for
the oxygen-rich mixtures when NO can be stabilized by solvation with
O2.
Figure 5
Local enhancement for O2 molecules surrounding
NO molecules
calculated for the systems with the five N:O ratios studied using
RxFPMC and the BLYP-D3 functional.
Local enhancement for O2 molecules surrounding
NO molecules
calculated for the systems with the five N:O ratios studied using
RxFPMC and the BLYP-D3 functional.In conclusion, a new first-principles Monte Carlo approach
for
simulating reactive equilibria is introduced that does not rely on
any set of prespecified reactions nor on ideal-gas equilibrium constants
that hamper conventional RxMC simulations. Using a first-principles
description of the system’s energetics allows one to view molecules
as being formed by the strong aggregation of atoms. Special Monte
Carlo moves can then be used to efficiently sample the distribution
of atoms over molecular species, thereby overcoming the kinetic limitations
of first-principles MD simulations. Application of the RxFPMC method
to nitrogen/oxygen mixtures in the highly compressed vapor phase region
shows significant enhancement of NO molecules. Structural analysis
demonstrates stabilization of NO and destabilization of O2 molecules and preferential solvation of NO by O2. These
structural features support an asymmetry in the species distributions
and a maximum in the NO concentration when oxygen is present in slight
excess. This study illustrates the promise of using RxFPMC to investigate
reaction equilibria in highly nonideal environments.
Computational
Details
The RxFPMC simulations are performed with the CP2K
simulation package[35] which solves the KS-DFT
equations with the Gaussian
plane wave method as implemented in the Quickstep module.[36] Most of the simulations use the BLYP functional[37,38] with the third-generation Grimme dispersion correction (D3)[39] along with a triple-ζ, double polarization
basis set,[40] GTH pseudopotentials,[41,42] and a plane wave cutoff at 600 Ry. For one state point, additional
simulations with the M06[43] and rVV10[44,45] functionals are carried out to assess the accuracy of the predictions.
For the compressed vapor phase, only system sizes and atomic compositions
are considered that lead to an even number of electrons and the spin
multiplicity of the entire system is restricted to 1, but employing
spin-polarized (unrestricted) KS-DFT. Constraining the overall spin
multiplicity to 1 is a reasonable assumption for bulk systems; i.e.,
there are enough molecules in the system to allow the individual molecules
to adjust their spin state as needed. Two triplet O2 molecules
that are sufficiently far apart constitute a singlet system; there
will be two spin up electrons on one molecule and two spin down electrons
on the other. Similarly, two NO molecules can adopt the spin state
as needed, i.e., both spin up or spin down when the two NO molecules
are formed from the reaction of a triplet O2 molecule and
a singlet N2 molecule. Snapshots illustrating the local
spin densities for the 2:1 and 1:2 N:O systems are shown in Figure S2. All N2 molecules are found
to be singlets without appreciable local spin density, whereas the
other species exhibit significant local spin density, e.g., triplet
O2 molecules.System sizes consisting of 96 and 192
atoms are used to confirm
that the RxFPMC approach converges to equilibrium compositions irrespective
of the starting compositions (see Figure ). Increasing the system size from 96 to
192 atoms may lessen the constraint on speciation caused by setting
the overall spin multiplicity to 1, but increases the average computer
time per MC cycle (where one MC cycle consists of Natom randomly selected moves) by a factor of about 14.
Since the species distributions obtained from the initial simulations
for 96- and 192-atoms systems are statistically indistinguishable
(see Table S1), subsequent simulations
exploring different ratios of nitrogen to oxygen atoms (N:O = 5:1,
2:1, 1:1, 1:2, and 1:5) are carried out using the smaller system size
in the NpT ensemble (Natom = 96, p = 30 GPa, and T = 3000
K). Equilibration periods run for at least 100 MC cycles, followed
by at least 150 MC cycles of production. The MC move probabilities
are adjusted to yield one accepted volume and one accepted N:O atom
identity exchange move per cycle, and the remainder is distributed
between O and N translational moves according to the atomic composition.
The maximum displacement applied for the volume moves is set to yield
an acceptance rate of about 20%; for example, 13 and 20 Å3 are used for the 1:1 N:O systems with 96 and 192 particles,
respectively (corresponding to about 0.7 and 0.5% of the total volume,
respectively). The N:O atom exchange moves yield an acceptance rate
of about 10–15%. The maximum displacements for the translational
moves are adjusted to yield acceptance rates of about 30% and are
about 0.35 and 0.45 Å for nitrogen and oxygen atoms, respectively.
To gather satisfactory statistics, 32 independent simulations are
carried out at each composition for the 96-atom system. These are
used to estimate the 95% confidence interval for the calculated properties.