Literature DB >> 27412912

Transcriptional and post-transcriptional control of the plant circadian gene regulatory network.

C Esteban Hernando1, Andrés Romanowski2, Marcelo J Yanovsky3.   

Abstract

The circadian clock drives rhythms in multiple physiological processes allowing plants to anticipate and adjust to periodic changes in environmental conditions. These physiological rhythms are associated with robust oscillations in the expression of thousands of genes linked to the control of photosynthesis, cell elongation, biotic and abiotic stress responses, developmental processes such as flowering, and the clock itself. Given its pervasive effects on plant physiology, it is not surprising that circadian clock genes have played an important role in the domestication of crop plants and in the improvement of crop productivity. Therefore, identifying the principles governing the dynamics of the circadian gene regulatory network in plants could strongly contribute to further speed up crop improvement. Here we provide an historical as well as a current description of our knowledge of the molecular mechanisms underlying circadian rhythms in plants. This work focuses on the transcriptional and post-transcriptional regulatory layers that control the very core of the circadian clock, and some of its complex interactions with signaling pathways that help synchronize plant growth and development to daily and seasonal changes in the environment. This article is part of a Special Issue entitled: Plant Gene Regulatory Mechanisms and Networks, edited by Dr. Erich Grotewold and Dr. Nathan Springer.
Copyright © 2016 Elsevier B.V. All rights reserved.

Keywords:  Alternative splicing; ChIP-seq; Circadian clock; Post-transcriptional regulation; Transcriptional regulation

Mesh:

Year:  2016        PMID: 27412912     DOI: 10.1016/j.bbagrm.2016.07.001

Source DB:  PubMed          Journal:  Biochim Biophys Acta Gene Regul Mech        ISSN: 1874-9399            Impact factor:   4.490


  11 in total

1.  Rhythmic Behavior Is Controlled by the SRm160 Splicing Factor in Drosophila melanogaster.

Authors:  Esteban J Beckwith; Carlos E Hernando; Sofía Polcowñuk; Agustina P Bertolin; Estefania Mancini; M Fernanda Ceriani; Marcelo J Yanovsky
Journal:  Genetics       Date:  2017-08-11       Impact factor: 4.562

2.  A Natural Variant of miR397 Mediates a Feedback Loop in Circadian Rhythm.

Authors:  Yan-Zhao Feng; Yang Yu; Yan-Fei Zhou; Yu-Wei Yang; Meng-Qi Lei; Jian-Ping Lian; Huang He; Yu-Chan Zhang; Wei Huang; Yue-Qin Chen
Journal:  Plant Physiol       Date:  2019-11-06       Impact factor: 8.340

3.  The circadian clock shapes the Arabidopsis transcriptome by regulating alternative splicing and alternative polyadenylation.

Authors:  Yuchen Yang; Yun Li; Aziz Sancar; Onur Oztas
Journal:  J Biol Chem       Date:  2020-04-17       Impact factor: 5.157

Review 4.  UTR-Dependent Control of Gene Expression in Plants.

Authors:  Ashish Kumar Srivastava; Yuming Lu; Gaurav Zinta; Zhaobo Lang; Jian-Kang Zhu
Journal:  Trends Plant Sci       Date:  2017-12-06       Impact factor: 18.313

5.  From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.

Authors:  Lisa Van den Broeck; Marieke Dubois; Mattias Vermeersch; Veronique Storme; Minami Matsui; Dirk Inzé
Journal:  Mol Syst Biol       Date:  2017-12-21       Impact factor: 11.429

6.  Mining of simple sequence repeats (SSRs) loci and development of novel transferability-across EST-SSR markers from de novo transcriptome assembly of Angelica dahurica.

Authors:  Chen Chen; Youjun Chen; Wenjuan Huang; Yijie Jiang; Huihui Zhang; Wei Wu
Journal:  PLoS One       Date:  2019-08-22       Impact factor: 3.240

7.  A high-throughput delayed fluorescence method reveals underlying differences in the control of circadian rhythms in Triticum aestivum and Brassica napus.

Authors:  Hannah Rees; Susan Duncan; Peter Gould; Rachel Wells; Mark Greenwood; Thomas Brabbs; Anthony Hall
Journal:  Plant Methods       Date:  2019-05-21       Impact factor: 4.993

Review 8.  Gene Regulatory Network Inference: Connecting Plant Biology and Mathematical Modeling.

Authors:  Lisa Van den Broeck; Max Gordon; Dirk Inzé; Cranos Williams; Rosangela Sozzani
Journal:  Front Genet       Date:  2020-05-25       Impact factor: 4.599

9.  Transcriptional Structure of Petunia Clock in Leaves and Petals.

Authors:  Marta I Terry; Marta Carrera-Alesina; Julia Weiss; Marcos Egea-Cortines
Journal:  Genes (Basel)       Date:  2019-10-30       Impact factor: 4.096

10.  Naturally occurring circadian rhythm variation associated with clock gene loci in Swedish Arabidopsis accessions.

Authors:  Hannah Rees; Ryan Joynson; James K M Brown; Anthony Hall
Journal:  Plant Cell Environ       Date:  2021-01-11       Impact factor: 7.228

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