Literature DB >> 27411693

Evolutionary plasticity of acipenseriform genomes.

Vladimir A Trifonov1, Svetlana S Romanenko2,3, Violetta R Beklemisheva2, Larisa S Biltueva2, Alexey I Makunin2, Natalia A Lemskaya2, Anastasia I Kulemzina2, Roscoe Stanyon4, Alexander S Graphodatsky2,3.   

Abstract

Acipenseriformes is an order of ray-finned fishes, comprising 27 extant species of sturgeons and paddlefishes inhabiting waters of the Northern Hemisphere. The order has a basal position within Actinopteri (ray-finned fish minus polypterids) and is characterized by many specific morphological and genomic features, including high diploid chromosome numbers, various levels of ploidy between species, unclear sex determination, and propensity to interspecific hybridization. Recent advances in molecular genetics, genomics, and comparative cytogenetics produced novel data on different aspects of acipenseriform biology, including improved phylogenetic reconstructions and better understanding of genome structure. Here, we discuss the cytogenetic and genomic traits of acipenseriforms and their connection with polyploidization and tolerance to interspecific hybridization.

Entities:  

Keywords:  Paddlefish; Polyploidy; Sturgeon; Whole genome duplication

Mesh：

Year:  2016        PMID： 27411693     DOI： 10.1007/s00412-016-0609-2

Source DB:  PubMed          Journal:  Chromosoma        ISSN： 0009-5915            Impact factor:   4.316


  26 in total

1.  Evidence for a slowed rate of molecular evolution in the order acipenseriformes.

Authors:  Jeannette Krieger; Paul A Fuerst
Journal:  Mol Biol Evol       Date:  2002-06       Impact factor: 16.240

2.  Genomics. Gene duplication and evolution.

Authors:  Michael Lynch
Journal:  Science       Date:  2002-08-09       Impact factor: 47.728

Review 3.  The advantages and disadvantages of being polyploid.

Authors:  Luca Comai
Journal:  Nat Rev Genet       Date:  2005-11       Impact factor: 53.242

4.  Age and biogeography of major clades in sturgeons and paddlefishes (Pisces: Acipenseriformes).

Authors:  Zuogang Peng; Arne Ludwig; Dengqiang Wang; Rui Diogo; Qiwei Wei; Shunping He
Journal:  Mol Phylogenet Evol       Date:  2006-09-27       Impact factor: 4.286

5.  Reconstruction of the vertebrate ancestral genome reveals dynamic genome reorganization in early vertebrates.

Authors:  Yoichiro Nakatani; Hiroyuki Takeda; Yuji Kohara; Shinichi Morishita
Journal:  Genome Res       Date:  2007-07-25       Impact factor: 9.043

Review 6.  Polyploidy in animals: effects of gene expression on sex determination, evolution and ecology.

Authors:  B Wertheim; L W Beukeboom; L van de Zande
Journal:  Cytogenet Genome Res       Date:  2013-06-28       Impact factor: 1.636

Review 7.  The pachytene checkpoint and its relationship to evolutionary patterns of polyploidization and hybrid sterility.

Authors:  X C Li; B C Barringer; D A Barbash
Journal:  Heredity (Edinb)       Date:  2008-09-03       Impact factor: 3.821

8.  Genome duplication events and functional reduction of ploidy levels in sturgeon (Acipenser, Huso and Scaphirhynchus).

Authors:  A Ludwig; N M Belfiore; C Pitra; V Svirsky; I Jenneckens
Journal:  Genetics       Date:  2001-07       Impact factor: 4.562

9.  The second highest chromosome count among vertebrates is observed in cultured sturgeon and is associated with genome plasticity.

Authors:  Miloš Havelka; Dmytro Bytyutskyy; Radka Symonová; Petr Ráb; Martin Flajšhans
Journal:  Genet Sel Evol       Date:  2016-02-11       Impact factor: 4.297

10.  Next-generation pyrosequencing of gonad transcriptomes in the polyploid lake sturgeon (Acipenser fulvescens): the relative merits of normalization and rarefaction in gene discovery.

Authors:  Matthew C Hale; Cory R McCormick; James R Jackson; J Andrew Dewoody
Journal:  BMC Genomics       Date:  2009-04-29       Impact factor: 3.969
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  7 in total

1.  Next Generation Sequencing of Chromosome-Specific Libraries Sheds Light on Genome Evolution in Paleotetraploid Sterlet (Acipenser ruthenus).

Authors:  Daria A Andreyushkova; Alexey I Makunin; Violetta R Beklemisheva; Svetlana A Romanenko; Anna S Druzhkova; Larisa B Biltueva; Natalya A Serdyukova; Alexander S Graphodatsky; Vladimir A Trifonov
Journal:  Genes (Basel)       Date:  2017-11-10       Impact factor: 4.096

2.  Molecular cytogenetic differentiation of paralogs of Hox paralogs in duplicated and re-diploidized genome of the North American paddlefish (Polyodon spathula).

Authors:  Radka Symonová; Miloš Havelka; Chris T Amemiya; William Mike Howell; Tereza Kořínková; Martin Flajšhans; David Gela; Petr Ráb
Journal:  BMC Genet       Date:  2017-03-02       Impact factor: 2.797

3.  Chromosome Distribution of Highly Conserved Tandemly Arranged Repetitive DNAs in the Siberian Sturgeon (Acipenser baerii).

Authors:  Larisa S Biltueva; Dmitry Yu Prokopov; Svetlana A Romanenko; Elena A Interesova; Manfred Schartl; Vladimir A Trifonov
Journal:  Genes (Basel)       Date:  2020-11-20       Impact factor: 4.096

4.  Effects of temperature on Veronaea botryosa infections in white sturgeon Acipenser transmontanus and fungal induced cytotoxicity of fish cell lines.

Authors:  Denver J Coleman; Alvin C Camus; Beatriz Martínez-López; Susan Yun; Brittany Stevens; Esteban Soto
Journal:  Vet Res       Date:  2018-02-01       Impact factor: 3.683

5.  Diversity of Immunoglobulin Light Chain Genes in Non-Teleost Ray-Finned Fish Uncovers IgL Subdivision into Five Ancient Isotypes.

Authors:  Sergey V Guselnikov; Konstantin O Baranov; Alexander M Najakshin; Ludmila V Mechetina; Nikolai A Chikaev; Alexey I Makunin; Sergey V Kulemzin; Daria A Andreyushkova; Matthias Stöck; Sven Wuertz; Jörn Gessner; Wesley C Warren; Manfred Schartl; Vladimir A Trifonov; Alexander V Taranin
Journal:  Front Immunol       Date:  2018-05-28       Impact factor: 7.561

6.  Anesthetic protocol for microinjection-related handling of Siberian sturgeon (Acipenser baerii; Acipenseriformes) prolarvae.

Authors:  Eun Jeong Kim; Yoon Kwon Nam
Journal:  PLoS One       Date:  2018-12-31       Impact factor: 3.240

7.  Reconstruction of proto-vertebrate, proto-cyclostome and proto-gnathostome genomes provides new insights into early vertebrate evolution.

Authors:  Yoichiro Nakatani; Prashant Shingate; Vydianathan Ravi; Nisha E Pillai; Aravind Prasad; Aoife McLysaght; Byrappa Venkatesh
Journal:  Nat Commun       Date:  2021-07-23       Impact factor: 14.919
  7 in total

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