Literature DB >> 27411445

Transitions in a genetic transcriptional regulatory system under Lévy motion.

Yayun Zheng1,2, Larissa Serdukova1,2,3, Jinqiao Duan2,4, Jürgen Kurths2,5,6.   

Abstract

Based on a stochastic differential equation model for a single genetic regulatory system, we examine the dynamical effects of noisy fluctuations, arising in the synthesis reaction, on the evolution of the transcription factor activator in terms of its concentration. The fluctuations are modeled by Brownian motion and α-stable Lévy motion. Two deterministic quantities, the mean first exit time (MFET) and the first escape probability (FEP), are used to analyse the transitions from the low to high concentration states. A shorter MFET or higher FEP in the low concentration region facilitates such a transition. We have observed that higher noise intensities and larger jumps of the Lévy motion shortens the MFET and thus benefits transitions. The Lévy motion activates a transition from the low concentration region to the non-adjacent high concentration region, while Brownian motion can not induce this phenomenon. There are optimal proportions of Gaussian and non-Gaussian noises, which maximise the quantities MFET and FEP for each concentration, when the total sum of noise intensities are kept constant. Because a weaker stability indicates a higher transition probability, a new geometric concept is introduced to quantify the basin stability of the low concentration region, characterised by the escaping behaviour.

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Year:  2016        PMID: 27411445      PMCID: PMC4944134          DOI: 10.1038/srep29274

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.379


  25 in total

1.  Target search on a dynamic DNA molecule.

Authors:  Thomas Schötz; Richard A Neher; Ulrich Gerland
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2011-11-17

2.  Lévy flights in evolutionary ecology.

Authors:  Benjamin Jourdain; Sylvie Méléard; Wojbor A Woyczynski
Journal:  J Math Biol       Date:  2011-10-15       Impact factor: 2.259

3.  Environmental context explains Lévy and Brownian movement patterns of marine predators.

Authors:  Nicolas E Humphries; Nuno Queiroz; Jennifer R M Dyer; Nicolas G Pade; Michael K Musyl; Kurt M Schaefer; Daniel W Fuller; Juerg M Brunnschweiler; Thomas K Doyle; Jonathan D R Houghton; Graeme C Hays; Catherine S Jones; Leslie R Noble; Victoria J Wearmouth; Emily J Southall; David W Sims
Journal:  Nature       Date:  2010-06-09       Impact factor: 49.962

4.  Optimal target search on a fast-folding polymer chain with volume exchange.

Authors:  Michael A Lomholt; Tobias Ambjörnsson; Ralf Metzler
Journal:  Phys Rev Lett       Date:  2005-12-22       Impact factor: 9.161

5.  Transcriptional control of noise in gene expression.

Authors:  Alvaro Sánchez; Jané Kondev
Journal:  Proc Natl Acad Sci U S A       Date:  2008-03-19       Impact factor: 11.205

6.  Barrier crossing driven by Lévy noise: universality and the role of noise intensity.

Authors:  Aleksei V Chechkin; Oleksii Yu Sliusarenko; Ralf Metzler; Joseph Klafter
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2007-04-02

7.  Live imaging of nascent RNA dynamics reveals distinct types of transcriptional pulse regulation.

Authors:  Tetsuya Muramoto; Danielle Cannon; Marek Gierlinski; Adam Corrigan; Geoffrey J Barton; Jonathan R Chubb
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-23       Impact factor: 11.205

Review 8.  Single-molecule approaches to stochastic gene expression.

Authors:  Arjun Raj; Alexander van Oudenaarden
Journal:  Annu Rev Biophys       Date:  2009       Impact factor: 12.981

9.  Stochastic mRNA synthesis in mammalian cells.

Authors:  Arjun Raj; Charles S Peskin; Daniel Tranchina; Diana Y Vargas; Sanjay Tyagi
Journal:  PLoS Biol       Date:  2006-10       Impact factor: 8.029

10.  The linear interplay of intrinsic and extrinsic noises ensures a high accuracy of cell fate selection in budding yeast.

Authors:  Yongkai Li; Ming Yi; Xiufen Zou
Journal:  Sci Rep       Date:  2014-07-21       Impact factor: 4.379

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  2 in total

1.  Metastability for discontinuous dynamical systems under Lévy noise: Case study on Amazonian Vegetation.

Authors:  Larissa Serdukova; Yayun Zheng; Jinqiao Duan; Jürgen Kurths
Journal:  Sci Rep       Date:  2017-08-24       Impact factor: 4.379

2.  Thermodynamics of Superdiffusion Generated by Lévy-Wiener Fluctuating Forces.

Authors:  Łukasz Kuśmierz; Bartłomiej Dybiec; Ewa Gudowska-Nowak
Journal:  Entropy (Basel)       Date:  2018-08-31       Impact factor: 2.524

  2 in total

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