Literature DB >> 27410735

Structure Change from β-Strand and Turn to α-Helix in Histone H2A-H2B Induced by DNA Damage Response.

Yudai Izumi1, Kentaro Fujii2, Frank Wien3, Chantal Houée-Lévin4, Sandrine Lacombe5, Daniela Salado-Leza5, Erika Porcel5, Rawand Masoud4, Satoshi Yamamoto6, Matthieu Réfrégiers3, Marie-Anne Hervé du Penhoat7, Akinari Yokoya8.   

Abstract

Using synchrotron radiation-based circular dichroism spectroscopy, we found that the DNA damage response induces an increase of α-helix structure and a decrease of β-strand and turn structures in histone H2A-H2B extracted from x-irradiated human HeLa cells. The structural alterations correspond to the assumption that an average of eight amino acid residues form new α-helix structures at 310 K. We propose the structural transition from β-strand and turn structures to an α-helix structure in H2A-H2B as a novel, to our knowledge, process involved in the DNA damage response.
Copyright © 2016 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2016        PMID: 27410735      PMCID: PMC4945303          DOI: 10.1016/j.bpj.2016.06.002

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  49 in total

1.  Acetylation increases the alpha-helical content of the histone tails of the nucleosome.

Authors:  X Wang; S C Moore; M Laszckzak; J Ausió
Journal:  J Biol Chem       Date:  2000-11-10       Impact factor: 5.157

2.  MDC1 maintains genomic stability by participating in the amplification of ATM-dependent DNA damage signals.

Authors:  Zhenkun Lou; Katherine Minter-Dykhouse; Sonia Franco; Monica Gostissa; Melissa A Rivera; Arkady Celeste; John P Manis; Jan van Deursen; André Nussenzweig; Tanya T Paull; Frederick W Alt; Junjie Chen
Journal:  Mol Cell       Date:  2006-01-20       Impact factor: 17.970

3.  Accurate secondary structure prediction and fold recognition for circular dichroism spectroscopy.

Authors:  András Micsonai; Frank Wien; Linda Kernya; Young-Ho Lee; Yuji Goto; Matthieu Réfrégiers; József Kardos
Journal:  Proc Natl Acad Sci U S A       Date:  2015-06-02       Impact factor: 11.205

4.  Secondary Structure Alterations of Histones H2A and H2B in X-Irradiated Human Cancer Cells: Altered Histones Persist in Cells for at Least 24 Hours.

Authors:  Yudai Izumi; Satoshi Yamamoto; Kentaro Fujii; Akinari Yokoya
Journal:  Radiat Res       Date:  2015-10-21       Impact factor: 2.841

5.  Computed circular dichroism spectra for the evaluation of protein conformation.

Authors:  N Greenfield; G D Fasman
Journal:  Biochemistry       Date:  1969-10       Impact factor: 3.162

6.  Histone 2A, a heteromorphous family of eight protein species.

Authors:  M H West; W M Bonner
Journal:  Biochemistry       Date:  1980-07-08       Impact factor: 3.162

Review 7.  Histone modifications and DNA double-strand break repair after exposure to ionizing radiations.

Authors:  Clayton R Hunt; Deepti Ramnarain; Nobuo Horikoshi; Puneeth Iyengar; Raj K Pandita; Jerry W Shay; Tej K Pandita
Journal:  Radiat Res       Date:  2013-02-01       Impact factor: 2.841

8.  Ubiquitin-binding protein RAP80 mediates BRCA1-dependent DNA damage response.

Authors:  Hongtae Kim; Junjie Chen; Xiaochun Yu
Journal:  Science       Date:  2007-05-25       Impact factor: 47.728

9.  Visualizing spatiotemporal dynamics of multicellular cell-cycle progression.

Authors:  Asako Sakaue-Sawano; Hiroshi Kurokawa; Toshifumi Morimura; Aki Hanyu; Hiroshi Hama; Hatsuki Osawa; Saori Kashiwagi; Kiyoko Fukami; Takaki Miyata; Hiroyuki Miyoshi; Takeshi Imamura; Masaharu Ogawa; Hisao Masai; Atsushi Miyawaki
Journal:  Cell       Date:  2008-02-08       Impact factor: 41.582

10.  The nucleosome acidic patch plays a critical role in RNF168-dependent ubiquitination of histone H2A.

Authors:  Francesca Mattiroli; Michael Uckelmann; Danny D Sahtoe; Willem J van Dijk; Titia K Sixma
Journal:  Nat Commun       Date:  2014       Impact factor: 14.919

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  3 in total

1.  Sample Volume Reduction Using the Schwarzschild Objective for a Circular Dichroism Spectrophotometer and an Application to the Structural Analysis of Lysine-36 Trimethylated Histone H3 Protein.

Authors:  Yudai Izumi; Koichi Matsuo
Journal:  Molecules       Date:  2018-11-02       Impact factor: 4.411

2.  DNA damage response induces structural alterations in histone H3-H4.

Authors:  Yudai Izumi; Kentaro Fujii; Satoshi Yamamoto; Koichi Matsuo; Hirofumi Namatame; Masaki Taniguchi; Akinari Yokoya
Journal:  J Radiat Res       Date:  2016-09-26       Impact factor: 2.724

3.  Circular dichroism spectroscopic study on structural alterations of histones induced by post-translational modifications in DNA damage responses: lysine-9 methylation of H3.

Authors:  Yudai Izumi; Koichi Matsuo; Kentaro Fujii; Akinari Yokoya; Masaki Taniguchi; Hirofumi Namatame
Journal:  J Radiat Res       Date:  2018-03-01       Impact factor: 2.724

  3 in total

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