| Literature DB >> 27408823 |
S Arati1, M K Sibin1, Dhananjaya I Bhat2, K V L Narasingarao2, G K Chetan1.
Abstract
Subarachnoid haemorrhage (SAH) is characterised by bleeding in the subarachnoid space in the brain. There are various polymorphisms in genes which are associated with this disease. We performed a systematic meta- analysis to investigate the relationship of APOE polymorphism on aSAH. A comprehensive literature search was done in the Pubmed database, Science Direct, Cochrane library and Google Scholar. The OR and 95% CI were evaluated for the gene and aSAH association using fixed and random effect models. Publication bias was assessed using Begg's funnel plot and Egger's regression test. All statistical evaluations were done using the software Review Manager 5.0 and Comprehensive Meta Analysis v2.2.023. A total of 9 studies were assessed on APOE polymorphism (1100 Cases, 2732 Control). Meta analysis results showed significant association in ε2/ ε2 versus ε3/ε3, ε2 versus ε3 genetic models and ε2 allele frequency. In subgroup analysis statistically significant association was observed in Asians in the genetic models ε2/ ε2 versus ε3/ε3, ε2/ε3 versus ε3/ε3, ε2 versus ε3 and also in ε2 allele frequency. However, in Caucasian population only ε2/ε2 versus ε3/ε3 genetic model showed significant association between APOE and risk of aSAH. In this meta-analysis study, the ε2/ε2 genotype is associated with increased risk of aSAH.Entities:
Keywords: Aneurysmal subarachnoid haemorrhage; Apolipoprotein E; Meta- analysis; Polymorphism
Year: 2016 PMID: 27408823 PMCID: PMC4925774 DOI: 10.1016/j.mgene.2016.06.003
Source DB: PubMed Journal: Meta Gene ISSN: 2214-5400
Characteristics of all eligible studies and distribution of Apo E genotype of cases and controls included in the meta-analysis.
| First Author(Year) | Country | Ethnicity | Source | Genotyping Method | No: of Cases/Control | Genotype for Cases/Controls | Allele for Cases/Controls | HW-E | References | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ε2/ε2 | ε2/ε3 | ε2/ε4 | ε3/ε3 | ε3/ε4 | ε4/ε4 | ε2 | ε3 | ε4 | ||||||||
| UK | Caucasians | HB | PCR_RFLP | 96/406 | 2/4 | 48/222 | 4/12 | 8/45 | 5/13 | 29/ 110 | 56/66 | 69/ 325 | 67/ 245 | 0.76 | ||
| Japan | Asian | HB | PCR_RFLP | 37/1126 | 1/11 | 2/73 | 0/8 | 21/ 819 | 11/ 202 | 2/13 | 4/103 | 55/1913 | 15/ 236 | / | ||
| China | Asian | HB | PCR-RFLP | 104/123 | 0/2 | 17/13 | 2/2 | 69/89 | 15/17 | 1/0 | 19/19 | 170/208 | 19/19 | 0.29 | ||
| Japan | Asian | HB | PCR_RFLP | 100/100 | NA | NA | NA | NA | NA | NA | 8/7 | 171/ 164 | 21/29 | NA | ||
| USA | Caucasians | HB | Taq man assay | 107/202 | 0/1 | 10/32 | 1/2 | 61/97 | 20/46 | 2/6 | 11/36 | 152/ 272 | 25/60 | 0.22 | ||
| Japan | Asian | HB | PCR_RFLP | 362/332 | NA | NA | NA | NA | NA | NA | 13/13 | 44/38 | 305/ 280 | NA | ||
| Italy | Caucasians | HB | PCR-RFLP | 146/222 | 6/1 | 17/28 | 1/0 | 107/161 | 15/31 | 0/1 | 30/30 | 246/ 381 | 16/33 | 0.43 | ||
| Sweden | Caucasians | HB | Taq man assay | 148/221 | NA | NA | NA | NA | NA | NA | NA | NA | 46/68 | NA | ||
| China | Asian | HB | PCR-RFLP | 150/150 | 9/1 | 35/21 | 4/7 | 76/80 | 25/31 | 1/10 | 57/30 | 212/ 212 | 31/58 | 0.08 | ||
Hardy–Weinberg equilibrium.
Data not given.
Hospital Based.
Fig. 1Flow diagram of study selection.
Fig. 2Forest plots of OR with 95% CI for the association of APOE polymorphisms and aSAH risk in the genetic model (A) ε2/ε2 versus ε3/ε3 (B) ε2 versus ε3 (C) ε2 allele frequency (D) ε4 allele frequency.
Summary of data of genes and their polymorphisms investigated and their odds ratio with 95%.
| SL no | Gene | Overall/subgroup | Fixed effects OR (95%CI) | Random effects OR (95% CI) | I2 for heterogeneity (%) | ||
|---|---|---|---|---|---|---|---|
| ApoE | |||||||
| 1 | ε2 ε2 vs ε3 ε3 | All | 3.30 [1.48.7.37] | 3.14 [1.15.8.58] | 14 | 0.33 | |
| Asian | 3.09 [1.01.9.47] | 2.71 [0.43.17.7] | 45 | 0.16 | |||
| Caucasian | 3.55 [1.12.11.3] | 3.25 [0.85.12.2] | 7 | 0.34 | |||
| 2 | ε2 ε3 vs ε3ε3 | All | 1.05 [0.78.1.43] | 1.05 [0.69.1.58] | 38 | 0.15 | 0.74 |
| Asian | 1.65 [1.04.2.61] | 1.65 [1.03.2.62] | 0 | 0.83 | |||
| Caucasian | 0.73 [0.48.1.12] | 0.74 [0.48.1.13] | 0 | 0.48 | 0.15 | ||
| 3 | ε2 ε4 vs ε3 ε3 | All | 1.20 [0.61.2.37] | 1.24 [0.62.2.45] | 0 | 0.76 | 0.60 |
| Asian | 0.82 [0.30.2.25] | 0.86 [0.31.2.33] | 0 | 0.64 | 0.70 | ||
| Caucasian | 1.71 [0.68.4.32] | 1.71 [0.67.4.37] | 0 | 0.69 | 0.25 | ||
| 4 | ε4 ε4 vs ε3 ε3 | All | 0.92 [0.52.1.62] | 1.05 [0.33.3.35] | 0.93 | ||
| Asian | 0.63 [0.23.1.75] | 1.31 [0.06.29.7] | 0.87 | ||||
| Caucasian | 1.12 [0.55.2.26] | 1.13 [0.54.2.37] | 0 | 0.48 | 0.75 | ||
| 5 | ε3 ε4 vs ε3 ε3 | All | 1.00 [0.77.1.29] | 1.02 [0.74.1.39] | 30 | 0.21 | 0.98 |
| Asian | 1.17 [0.78.1.76] | 1.23 [0.72.2.11] | 43 | 0.17 | 0.44 | ||
| Caucasian | 0.89 [0.64.1.25] | 0.89 [0.61.1.29] | 18 | 0.30 | 0.51 | ||
| 6 | ε2 vs ε3 | All | 1.26 [1.00.1.59] | 1.23 [0.93.1.64] | 28 | 0.21 | |
| Asian | 1.46 [1.06.2.02] | 1.46 [1.06.2.01] | 0 | 0.58 | |||
| Caucasian | 1.07 [0.77.1.49] | 1.03 [0.59.1.82] | 0.69 | ||||
| 7 | ε4 vs ε3 | All | 0.95 [0.79.1.14] | 0.98 [0.71.1.35] | 0.89 | ||
| Asian | 0.93 [0.73.1.18] | 1.03 [0.62.1.72] | 0.91 | ||||
| Caucasian | 0.97 [0.74.1.28] | 0.94 [0.64.1.39] | 46 | 0.16 | 0.75 | ||
| 8 | ε2 allele frequency | All | 1.28 [1.02.1.60] | 1.23 [0.91.1.67] | 39 | 0.12 | |
| Asian | 1.51 [1.11.2.06] | 1.49 [1.09.2.06] | 2 | 0.40 | |||
| Caucasian | 1.06 [0.76.1.47] | 1.02 [0.58.1.81] | 0.73 | ||||
| 9 | ε3 allele frequency | All | 0.94 [0.81.1.09] | 0.93 [0.78.1.11] | 27 | 0.21 | 0.42 |
| Asian | 0.94 [0.76.1.15] | 0.91 [0.69.1.20] | 43 | 0.15 | 0.53 | ||
| Caucasian | 0.95 [0.77.1.17] | 0.94 [0.74.1.20] | 21 | 0.28 | 0.62 | ||
| 10 | ε4 allele frequency | All | 0.83 [0.72.0.95] | 0.90 [0.69.1.18] | 0.44 | ||
| Asian | 0.76 [0.64.0.91] | 0.88 [0.56.1.38] | 0.58 | ||||
| Caucasian | 0.98 [0.77.1.24] | 0.97 [0.74.1.27] | 19 | 0.30 | 0.84 | ||
P value less than 0.05 is represented as bold figures in the table.
Fig. 3Forest plots of OR with 95%CI in the subgroup analysis for the association of APOE polymorphisms and aSAH risk in the genetic model (A) ε2/ε2 versus ε3/ε3[Asian] (B) ε2/ε2 versus ε3/ε3[Caucasian] (C) ε2/ε3 versus ε3/ε3[Asian] (D) ε2 versus ε3[Asian] (E) ε2 allele frequency[Asian].