Literature DB >> 27407216

A new measurement approach of ionizing radiation in irradiated trout (Oncorhynchus mykiss) by Randomly Polymorphic DNA-Polymerase Chain Reaction.

Ergün Şakalar1, Sühendan Mol2.   

Abstract

Trout (Oncorhynchus mykiss) were irradiated at doses of 0.250, 0.500, 1, 3, 5, 7 and 9 kGy in gamma cell. DNAs were extracted from the irradiated samples before and after storage. 1ERP primers were designed, and RAPD-PCR (Randomly Polymorphic DNA-Polymerase Chain Reaction) was applied to make randomly amplifications on the DNA of the irradiated samples. Agarose gel profiles of irradiated fish were obtained to determine change of band profiles. In addition, DNA fragmentation occurring in each dose was determined by comet assay for the verification of methodology developed in this study. The molecular methodology was developed to estimate ionizing radiation (IR) level in irradiated fish. This methodology allows the analysis of the trout irradiated up to the dose limit of around 0.5 kGy and stored for a period of three months.

Entities:  

Keywords:  Comet assay; DNA damage; Irradiation dose; Oncorhynchus mykiss; PCR

Year:  2016        PMID: 27407216      PMCID: PMC4921072          DOI: 10.1007/s13197-015-2168-6

Source DB:  PubMed          Journal:  J Food Sci Technol        ISSN: 0022-1155            Impact factor:   2.701


  6 in total

1.  Clustered DNA damages induced in isolated DNA and in human cells by low doses of ionizing radiation.

Authors:  B M Sutherland; P V Bennett; O Sidorkina; J Laval
Journal:  Proc Natl Acad Sci U S A       Date:  2000-01-04       Impact factor: 11.205

Review 2.  History and principles of conductive media for standard DNA electrophoresis.

Authors:  Jonathan R Brody; Scott E Kern
Journal:  Anal Biochem       Date:  2004-10-01       Impact factor: 3.365

3.  A comparative evaluation of radiation-induced DNA damage using real-time PCR: influence of base composition.

Authors:  Sangyong Lim; Hyunjin Yoon; Sangryeol Ryu; Jinwoo Jung; Myungchul Lee; Dongho Kim
Journal:  Radiat Res       Date:  2006-04       Impact factor: 2.841

4.  Determination of irradiation dose and distinguishing between irradiated and non irradiated fish meat by real-time PCR.

Authors:  Ergün Şakalar; Sühendan Mol
Journal:  Food Chem       Date:  2015-03-06       Impact factor: 7.514

5.  Effect of DNA damage on PCR amplification efficiency with the relative threshold cycle method.

Authors:  Jan A Sikorsky; Donald A Primerano; Terry W Fenger; James Denvir
Journal:  Biochem Biophys Res Commun       Date:  2004-10-22       Impact factor: 3.575

6.  New approach for discrimination of Vibrio vulnificus by real-time PCR before and after gamma-irradiation.

Authors:  Jung-Lim Lee; Robert E Levin
Journal:  J Microbiol Methods       Date:  2008-01-04       Impact factor: 2.363

  6 in total

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