Literature DB >> 27403944

Circulating MicroRNA Quantification Using DNA-binding Dye Chemistry and Droplet Digital PCR.

Manuela Ferracin1, Irene Salamon2, Laura Lupini2, Elena Miotto2, Silvia Sabbioni3, Massimo Negrini4.   

Abstract

Circulating (of cell-free) microRNAs (miRNAs) are released from cells into the blood stream. The amount of specific microRNAs in the circulation has been linked to a disease state and has the potential to be used as disease biomarker. A sensitive and accurate method for circulating microRNA quantification using a dye-based chemistry and droplet digital PCR technology has been recently developed. Specifically, using Locked Nucleic Acid (LNA)-based miRNA-specific primers with a green fluorescent DNA-binding dye in a compatible droplet digital PCR system it is possible to obtain the absolute quantification of specific miRNAs. Here, we describe how performing this technique to assess miRNA amount in biological fluids, such as plasma and serum, is both feasible and effective.

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Year:  2016        PMID: 27403944      PMCID: PMC4993260          DOI: 10.3791/54102

Source DB:  PubMed          Journal:  J Vis Exp        ISSN: 1940-087X            Impact factor:   1.355


  16 in total

Review 1.  Circulating microRNAs: novel biomarkers and extracellular communicators in cardiovascular disease?

Authors:  Esther E Creemers; Anke J Tijsen; Yigal M Pinto
Journal:  Circ Res       Date:  2012-02-03       Impact factor: 17.367

Review 2.  Circulating microRNA biomarker studies: pitfalls and potential solutions.

Authors:  Kenneth W Witwer
Journal:  Clin Chem       Date:  2014-11-12       Impact factor: 8.327

3.  Evaluation of quantitative miRNA expression platforms in the microRNA quality control (miRQC) study.

Authors:  Pieter Mestdagh; Nicole Hartmann; Lukas Baeriswyl; Ditte Andreasen; Nathalie Bernard; Caifu Chen; David Cheo; Petula D'Andrade; Mike DeMayo; Lucas Dennis; Stefaan Derveaux; Yun Feng; Stephanie Fulmer-Smentek; Bernhard Gerstmayer; Julia Gouffon; Chris Grimley; Eric Lader; Kathy Y Lee; Shujun Luo; Peter Mouritzen; Aishwarya Narayanan; Sunali Patel; Sabine Peiffer; Silvia Rüberg; Gary Schroth; Dave Schuster; Jonathan M Shaffer; Elliot J Shelton; Scott Silveria; Umberto Ulmanella; Vamsi Veeramachaneni; Frank Staedtler; Thomas Peters; Toumy Guettouche; Linda Wong; Jo Vandesompele
Journal:  Nat Methods       Date:  2014-06-29       Impact factor: 28.547

Review 4.  Exosomes as divine messengers: are they the Hermes of modern molecular oncology?

Authors:  C Braicu; C Tomuleasa; P Monroig; A Cucuianu; I Berindan-Neagoe; G A Calin
Journal:  Cell Death Differ       Date:  2014-09-19       Impact factor: 15.828

5.  Argonaute2 complexes carry a population of circulating microRNAs independent of vesicles in human plasma.

Authors:  Jason D Arroyo; John R Chevillet; Evan M Kroh; Ingrid K Ruf; Colin C Pritchard; Donald F Gibson; Patrick S Mitchell; Christopher F Bennett; Era L Pogosova-Agadjanyan; Derek L Stirewalt; Jonathan F Tait; Muneesh Tewari
Journal:  Proc Natl Acad Sci U S A       Date:  2011-03-07       Impact factor: 11.205

6.  Quantification of circulating miRNAs by droplet digital PCR: comparison of EvaGreen- and TaqMan-based chemistries.

Authors:  Elena Miotto; Elena Saccenti; Laura Lupini; Elisa Callegari; Massimo Negrini; Manuela Ferracin
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2014-12       Impact factor: 4.254

7.  MicroRNAs are transported in plasma and delivered to recipient cells by high-density lipoproteins.

Authors:  Kasey C Vickers; Brian T Palmisano; Bassem M Shoucri; Robert D Shamburek; Alan T Remaley
Journal:  Nat Cell Biol       Date:  2011-03-20       Impact factor: 28.824

8.  Absolute quantification of cell-free microRNAs in cancer patients.

Authors:  Manuela Ferracin; Laura Lupini; Irene Salamon; Elena Saccenti; Maria Vittoria Zanzi; Andrea Rocchi; Lucia Da Ros; Barbara Zagatti; Gentian Musa; Cristian Bassi; Alessandra Mangolini; Giorgio Cavallesco; Antonio Frassoldati; Stefano Volpato; Paolo Carcoforo; Alan B Hollingsworth; Massimo Negrini
Journal:  Oncotarget       Date:  2015-06-10

9.  Absolute quantification by droplet digital PCR versus analog real-time PCR.

Authors:  Christopher M Hindson; John R Chevillet; Hilary A Briggs; Emily N Gallichotte; Ingrid K Ruf; Benjamin J Hindson; Robert L Vessella; Muneesh Tewari
Journal:  Nat Methods       Date:  2013-09-01       Impact factor: 28.547

Review 10.  Methodological challenges in utilizing miRNAs as circulating biomarkers.

Authors:  Leni Moldovan; Kara E Batte; Joanne Trgovcich; Jon Wisler; Clay B Marsh; Melissa Piper
Journal:  J Cell Mol Med       Date:  2014-02-18       Impact factor: 5.310

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  6 in total

1.  Quantification of circulating microRNAs by droplet digital PCR for cancer detection.

Authors:  Priscila D R Cirillo; Katia Margiotti; Alvaro Mesoraca; Claudio Giorlandino
Journal:  BMC Res Notes       Date:  2020-07-23

2.  Molecular testing on bronchial washings for the diagnosis and predictive assessment of lung cancer.

Authors:  Roberta Roncarati; Laura Lupini; Elena Miotto; Elena Saccenti; Susanna Mascetti; Luca Morandi; Cristian Bassi; Debora Rasio; Elisa Callegari; Valentina Conti; Rosa Rinaldi; Giovanni Lanza; Roberta Gafà; Alberto Papi; Antonio Frassoldati; Silvia Sabbioni; Franco Ravenna; Gian L Casoni; Massimo Negrini
Journal:  Mol Oncol       Date:  2020-06-24       Impact factor: 6.603

3.  Circulating miR-184 is a potential predictive biomarker of cardiac damage in Anderson-Fabry disease.

Authors:  Irene Salamon; Elena Biagini; Paolo Kunderfranco; Roberta Roncarati; Manuela Ferracin; Nevio Taglieri; Elena Nardi; Noemi Laprovitera; Luciana Tomasi; Marisa Santostefano; Raffaello Ditaranto; Giovanni Vitale; Elena Cavarretta; Antonio Pisani; Eleonora Riccio; Valeria Aiello; Irene Capelli; Gaetano La Manna; Nazzareno Galiè; Letizia Spinelli; Gianluigi Condorelli
Journal:  Cell Death Dis       Date:  2021-12-11       Impact factor: 8.469

4.  Cancer Site-Specific Multiple microRNA Quantification by Droplet Digital PCR.

Authors:  Noemi Laprovitera; Maria Grzes; Elisa Porcellini; Manuela Ferracin
Journal:  Front Oncol       Date:  2018-10-15       Impact factor: 6.244

5.  MicroRNA expression profiling with a droplet digital PCR assay enables molecular diagnosis and prognosis of cancers of unknown primary.

Authors:  Noemi Laprovitera; Mattia Riefolo; Elisa Porcellini; Giorgio Durante; Ingrid Garajova; Francesco Vasuri; Ariane Aigelsreiter; Nadia Dandachi; Giuseppe Benvenuto; Federico Agostinis; Silvia Sabbioni; Ioana Berindan Neagoe; Chiara Romualdi; Andrea Ardizzoni; Davide Trerè; Martin Pichler; Antonietta D'Errico; Manuela Ferracin
Journal:  Mol Oncol       Date:  2021-06-23       Impact factor: 6.603

6.  Multi-analytical test based on serum miRNAs and proteins quantification for ovarian cancer early detection.

Authors:  Priscila D R Cirillo; Katia Margiotti; Marco Fabiani; Mateus C Barros-Filho; David Sparacino; Antonella Cima; Salvatore A Longo; Marina Cupellaro; Alvaro Mesoraca; Claudio Giorlandino
Journal:  PLoS One       Date:  2021-08-05       Impact factor: 3.240

  6 in total

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