| Literature DB >> 27403452 |
Tomoyuki Iwasaki1, Naoe Kaneko1, Yuki Ito1, Hiroyuki Takeda2, Tatsuya Sawasaki2, Toshio Heike3, Kiyoshi Migita4, Kazunaga Agematsu5, Atsushi Kawakami6, Shinnosuke Morikawa1, Sho Mokuda1, Mie Kurata1, Junya Masumoto1.
Abstract
Nucleotide-binding oligomerization domain-containing protein (Nod) 2 is an intracellular pattern recognition receptor, which recognizes muramyl dipeptide (N-Acetylmuramyl-L-Alanyl-D-Isoglutamine: MDP), a bacterial peptidoglycan component, and makes a NF-κB-activating complex called nodosome with adaptor protein RICK (RIP2/RIPK2). Nod2 mutants are associated with the autoinflammatory diseases, Blau syndrome (BS)/early-onset sarcoidosis (EOS). For drug discovery of BS/EOS, we tried to develop Nod2-nodosome in a cell-free system. FLAG-tagged RICK, biotinylated-Nod2, and BS/EOS-associated Nod2 mutants were synthesized, and proximity signals between FLAG-tagged and biotinylated proteins were detected by amplified luminescent proximity homogeneous assay (ALPHA). Upon incubation with MDP, the ALPHA signal of interaction between Nod2-WT and RICK was increased in a dose-dependent manner. The ALPHA signal of interaction between RICK and the BS/EOS-associated Nod2 mutants was more significantly increased than Nod2-WT. Notably, the ALPHA signal between Nod2-WT and RICK was increased upon incubation with MDP, but not when incubated with the same concentrations, L-alanine, D-isoglutamic acid, or the MDP-D-isoform. Thus, we successfully developed Nod2-nodosome in a cell-free system reflecting its function in vivo, and it can be useful for screening Nod2-nodosome-targeted therapeutic molecules for BS/EOS and granulomatous inflammatory diseases.Entities:
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Year: 2016 PMID: 27403452 PMCID: PMC4926014 DOI: 10.1155/2016/2597376
Source DB: PubMed Journal: ScientificWorldJournal ISSN: 1537-744X
Oligonucleotide sequences for plasmid construction.
| Primer name | Primer sequence |
|---|---|
| S1-Nod2_F | 5′- |
| Nod2-T1(F)_R | 5′- |
| Nod2-T1(CARDs)_R | 5′- |
| S1-RICK_F | 5′- |
| RICK-T1(F)_R | 5′- |
| S1-RICK(CARD)_F | 5′- |
| attB1-S1 | 5′-GGGGACAAGTTTGTACAAAAAAGCAGGCTTCCACCCACCACCACCAATG-3′ |
| attB2-T1 | 5′-GGGGACCACTTTGTACAAGAAAGCTGGGTCTCCAGCACTAGCTCCAGA-3′ |
| Nod2-R334W_F | 5′-TTCCCATTCAGCTGC |
| Nod2-R334W_R | 5′-GCACTGCAGCTG |
| Nod2-N670K_F | 5′-GCCGAGCCGCAC |
| Nod2-N670K_R | 5′-TGCTGTGATCTGAAG |
Underline indicates S1 or T1 sequence.
Bold indicates Kozak consensus sequence.
Italic indicates mutation codons for specific amino acids.
Figure 1Schematic representation of Nod2 and RICK, and sequencing chromatograms of Nod2 plasmids containing the BS/EOS-associated mutations, and protein syntheses. (a) Schematic representations of biotinylated wild-type and mutant Nod2. C-terminal biotinylated full-length wild-type Nod2 (Nod2-WT-Btn), full-length R334W-mutated Nod2 (Nod2-R334W-Btn), full-length N670K-mutated Nod2 (Nod2-N670K-Btn), and tandem CARD1- and CARD2-domains-only Nod2 (Nod2-CARDs) are indicated. (b) Schematic representations of FLAG-tagged wild-type and CARD-domain-only RICK. N-terminal FLAG-tagged full-length RICK (FLAG-RICK-FL) and CARD-domain-only RICK (FLAG-RICK-CARD) are indicated. The caspase recruitment domain (CARD) is indicated by black boxes. The nucleotide-binding oligomerization domain-containing protein (Nod) is indicated by grey boxes. Leucine-rich repeats are indicated by striped boxes. Amino acid sequence number and mutated amino acids are indicated under each schema. (c) Sequencing chromatograms of Nod2 and mutated-Nod2 plasmids. The wild-type and mutated-Nod2 plasmids pDONR221-Nod2-WT, pDONR221-Nod2-R334W, and pDONR221-Nod2-N670K were sequenced to confirm (from CGG to TGG corresponding to R334W in the right panel; from AAC to AAA corresponding to N670K in the left panel) mutations at the appropriate site. (d) Western blotting analysis of biotinylated Nod2 and its mutants. A total of 1.5 μg of synthetic protein was subjected to SDS-PAGE followed by Western blotting. Protein detection on the membranes was performed using HRP-conjugated streptavidin. Molecular weights are indicated at right. (e) Western blotting analysis of FLAG-tagged RICK and CARD-domain-only RICK. A total of 1.5 μg of synthetic protein was subjected to SDS-PAGE followed by Western blotting. Protein detection on the membranes was performed using anti-FLAG mAb M2. Molecular weights are indicated at right.
Figure 2Construction of Nod2-nodosome containing the BS/EOS-associated mutation in a cell-free system. Synthetic protein-protein interactions were detected by pull-down assay and amplified luminescent proximity homogeneous assay (ALPHA). (a) Biotinylated-Nod2-WT (Nod2-WT-Btn) and 1 μg FLAG-tagged RICK-WT (FLAG-RICK-WT) lysed in 300 μL NP-40 buffer were precipitated with 20 μL streptavidin-conjugated agarose beads with or without MDP. The precipitations were subjected to SDS-PAGE and immunoblotting. Detection on the blotting membranes was performed using anti-FLAG mAb M2 or anti-Nod2 mAb. (b) A total of 100 ng of each protein indicated was incubated with 5 μg/mL anti-FLAG mAb M2, 16.67 μg/mL protein-A-conjugated ALPHA acceptor beads, and 16.67 μg/mL streptavidin-conjugated ALPHA donor beads for 24 hours, with or without 5.33 mg/mL MDP or 5 mg/mL N-Acetylmuramyl-D-Alanyl-D-Isoglutamine (MDP-D-isomer). Responses (counts) were measured using the EnSpire™ Multimode Plate Reader. (c) Activation of Nod2-nodosome in a cell-free system by MDP degradation components. Interactions between Nod2-WT-Btn and FLAG-RICK-WT were detected by ALPHA. A total of 100 ng of Nod2-WT-Btn and FLAG-RICK-WT were incubated with 5 μg/mL anti-FLAG mAb M2, 16.67 μg/mL protein-A-conjugated ALPHA acceptor beads and 16.67 μg/mL streptavidin-conjugated ALPHA donor beads for 24 hours, without or with 5.33 mg/mL MDP, 5.33 mg/mL MDP (D-isomer), 5.33 mg/mL N-acetylglucosamine (GlcNAc), 5.33 mg/mL L-alanine (L-Ala), or 5.33 mg/mL D-isoglutamine (D-isoGlu). Responses (counts) were measured using the EnSpire Multimode Plate Reader. The results are representative of three independent experiments and given as means ± standard deviation from triplicate wells. (d) A total of 100 ng of Nod2-WT-Btn, or Nod2-R334W-Btn, or Nod2-N670K-Btn with FLAG-RICK-WT was incubated with 5 μg/mL anti-FLAG mAb M2, 16.67 μg/mL protein-A-conjugated ALPHA acceptor beads, and 16.67 μg/mL streptavidin-conjugated ALPHA donor beads for 24 hours, with or without 5.33 mg/mL or 13.33 mg/mL MDP or 13.33 mg/mL MDP-D-isomer. The results are representative of three independent experiments and given as means ± standard deviation from triplicate wells. CARD, caspase recruitment domain; MDP, muramyl dipeptide; WT, wild-type; P, precipitation; WB, western blot. p value < 0.05 and p value < 0.01 were considered statistically significant using Student's t-test.