Literature DB >> 27402533

Crystal structure of DPF3b in complex with an acetylated histone peptide.

Weiguo Li1, Anthony Zhao2, Wolfram Tempel2, Peter Loppnau2, Yanli Liu3.   

Abstract

Histone acetylation plays an important role in chromatin dynamics and is associated with active gene transcription. This modification is written by acetyltransferases, erased by histone deacetylases and read out by bromodomain containing proteins, and others such as tandem PHD fingers of DPF3b. Here we report the high resolution crystal structure of the tandem PHD fingers of DPF3b in complex with an H3K14ac peptide. In the complex structure, the histone peptide adopts an α-helical conformation, unlike previously observed by NMR, but similar to a previously reported MOZ-H3K14ac complex structure. Our crystal structure adds to existing evidence that points to the α-helix as a natural conformation of histone tails as they interact with histone-associated proteins.
Copyright © 2016 Elsevier Inc. All rights reserved.

Keywords:  DPF3b; H3K14ac; Tandem PHD fingers; α-Helical conformation

Mesh:

Substances:

Year:  2016        PMID: 27402533     DOI: 10.1016/j.jsb.2016.07.001

Source DB:  PubMed          Journal:  J Struct Biol        ISSN: 1047-8477            Impact factor:   2.867


  10 in total

1.  Characteristics of a PHD Finger Subtype.

Authors:  Daniel Boamah; Tao Lin; Franchesca A Poppinga; Shraddha Basu; Shahariar Rahman; Francisca Essel; Suvobrata Chakravarty
Journal:  Biochemistry       Date:  2018-01-05       Impact factor: 3.162

2.  Family-Wide Characterization of Histone Binding Abilities of PHD Domains of AL Proteins in Arabidopsis thaliana.

Authors:  Xiao Liang; Ming Lei; Fangzhou Li; Xiajie Yang; Mengqi Zhou; Bing Li; Yu Cao; Siying Gong; Ke Liu; Jinlin Liu; Chao Qi; Yanli Liu
Journal:  Protein J       Date:  2018-12       Impact factor: 2.371

3.  Structural basis of molecular recognition of helical histone H3 tail by PHD finger domains.

Authors:  Alessio Bortoluzzi; Anastasia Amato; Xavier Lucas; Manuel Blank; Alessio Ciulli
Journal:  Biochem J       Date:  2017-05-04       Impact factor: 3.857

4.  Identification of H3K4me1-associated proteins at mammalian enhancers.

Authors:  Andrea Local; Hui Huang; Claudio P Albuquerque; Namit Singh; Ah Young Lee; Wei Wang; Chaochen Wang; Judy E Hsia; Andrew K Shiau; Kai Ge; Kevin D Corbett; Dong Wang; Huilin Zhou; Bing Ren
Journal:  Nat Genet       Date:  2017-12-18       Impact factor: 38.330

5.  The ZZ-type zinc finger of ZZZ3 modulates the ATAC complex-mediated histone acetylation and gene activation.

Authors:  Wenyi Mi; Yi Zhang; Jie Lyu; Xiaolu Wang; Qiong Tong; Danni Peng; Yongming Xue; Adam H Tencer; Hong Wen; Wei Li; Tatiana G Kutateladze; Xiaobing Shi
Journal:  Nat Commun       Date:  2018-09-14       Impact factor: 14.919

6.  Selective binding of the PHD6 finger of MLL4 to histone H4K16ac links MLL4 and MOF.

Authors:  Yi Zhang; Younghoon Jang; Ji-Eun Lee; JaeWoo Ahn; Longxia Xu; Michael R Holden; Evan M Cornett; Krzysztof Krajewski; Brianna J Klein; Shu-Ping Wang; Yali Dou; Robert G Roeder; Brian D Strahl; Scott B Rothbart; Xiaobing Shi; Kai Ge; Tatiana G Kutateladze
Journal:  Nat Commun       Date:  2019-05-24       Impact factor: 14.919

Review 7.  Conserved Structure and Evolution of DPF Domain of PHF10-The Specific Subunit of PBAF Chromatin Remodeling Complex.

Authors:  Anton O Chugunov; Nadezhda A Potapova; Natalia S Klimenko; Victor V Tatarskiy; Sofia G Georgieva; Nataliya V Soshnikova
Journal:  Int J Mol Sci       Date:  2021-10-15       Impact factor: 5.923

Review 8.  Studying Chromatin Epigenetics with Fluorescence Microscopy.

Authors:  Afanasii I Stepanov; Zlata V Besedovskaia; Maria A Moshareva; Konstantin A Lukyanov; Lidia V Putlyaeva
Journal:  Int J Mol Sci       Date:  2022-08-12       Impact factor: 6.208

9.  Recognition of Histone H3 Methylation States by the PHD1 Domain of Histone Demethylase KDM5A.

Authors:  James E Longbotham; Mark J S Kelly; Danica Galonić Fujimori
Journal:  ACS Chem Biol       Date:  2021-02-23       Impact factor: 4.634

10.  Revealing Intrinsic Disorder and Aggregation Properties of the DPF3a Zinc Finger Protein.

Authors:  Julien Mignon; Denis Mottet; Giulia Verrillo; André Matagne; Eric A Perpète; Catherine Michaux
Journal:  ACS Omega       Date:  2021-07-13
  10 in total

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