| Literature DB >> 27392867 |
Carl-Henrik Andersson1, Oskar Hansson2,3, Lennart Minthon2,3, Niels Andreasen4, Kaj Blennow1, Henrik Zetterberg1,5, Ingmar Skoog1, Anders Wallin1, Staffan Nilsson6, Petronella Kettunen1,7.
Abstract
Alzheimer's disease (AD) is a neurodegenerative disorder represented by the accumulation of intracellular tau protein and extracellular deposits of amyloid-β (Aβ) in the brain. The gene sortilin 1 (SORT1) has previously been associated with cardiovascular disease in gene association studies. It has also been proposed to be involved in AD pathogenesis through facilitating Aβ clearance by binding apoE/Aβ complexes prior to cellular uptake. However, the neuropathological role of SORT1 in AD is not fully understood. To evaluate the associations between gene variants of SORT1 and risk of AD, we performed genetic analyses in a Swedish case-control cohort. Ten single nucleotide polymorphisms (SNPs), covering the whole SORT1 gene, were selected and genotyped in 620 AD patients and 1107 controls. The SNP rs17646665, located in a non-coding region of the SORT1 gene, remained significantly associated with decreased risk of AD after multiple testing (pc = 0.0061). In addition, other SNPs were found to be nominally associated with risk of AD, as well as altered cognitive function and the CSF biomarker Aβ42, but these associations did not survive correction for multiple testing. The fact that SORT1 has been strongly associated with risk of cardiovascular disease is intriguing as cardiovascular disease is also regarded as a risk factor for AD. Finally, increased knowledge about SORT1 function has a potential to increase our understanding of APOE, the strongest risk factor for AD.Entities:
Keywords: Amyloid beta-peptides; apolipoprotein E; biomarkers; genetic association studies; genotype; neuropsychological tests; risk factors; single nucleotide polymorphism; tau proteins; vesicular transport adaptor proteins
Mesh:
Substances:
Year: 2016 PMID: 27392867 PMCID: PMC5147507 DOI: 10.3233/JAD-160319
Source DB: PubMed Journal: J Alzheimers Dis ISSN: 1387-2877 Impact factor: 4.472
Demographics for Alzheimer’s disease (AD) cases and controls
| Parameter | AD | Control | ||
| Number of subjects | 620 | 1107 | ||
| Age1 | years | 75.4 ± 7.3 | 71.8 ± 5.6 | <0.001 |
| Sex | male | 243 (39.5) | 372 (33.7) | <0.05 |
| female | 372 (60.5) | 733 (66.3) | ||
| MMSE2 | 20 ± 5.6 | 29 ± 0.8 | <0.001 | |
| Number of | 0 | 186 (30.3) | 774 (70.2) | |
| 1 | 317 (51.6) | 298 (27.0) | <0.001 | |
| alleles | 2 | 111 (18.1) | 31 (2.8) |
Data are presented as absolute numbers with percentages in parentheses or as mean ± SD. P-values for categorical variables were calculated using chi-square statistical test and p-values for continuous variables were calculated using t-test. 1nAD = 614; nControl = 1104. 2nAD = 568; nControl = 837.
Fig.1Linkage disequilibrium (LD) plot for the ten selected SNPs within and in the vicinity of the SORT1 gene. The correlation between SNPs is shown by their pairwise r2 values indicated by numbers and greyscale. The plot was generated using Haploview software from the genotyping data in the cohort.
Summary of SORT1 SNPs studied
| SNP | Genomic position | Alleles | MAF (%) | SNP location |
| Chromosome 1 | minor:major | |||
| rs646776 | 109275908 | C:T | 23.6 | Near gene 3’ |
| rs464218 | 109313684 | G:A | 46.5 | 3’UTR |
| rs17585355 | 109315193 | C:A | 6.3 | Intron |
| rs11102972 | 109338099 | C:T | 23.0 | Intron |
| rs7536292 | 109352071 | C:T | 17.4 | Intron |
| rs11142 | 109354481 | A:G | 30.2 | Coding syn. |
| rs17646665 | 109369429 | G:A | 6.9 | Intron |
| rs1149175 | 109379755 | A:G | 14.5 | Intron |
| rs12037569 | 109381055 | T:G | 15.2 | Intron |
| rs72646553 | 109397881 | C:G | 22.4 | Coding syn. |
Presented are single-nucleotide polymorphisms (SNPs) numbered according to the gene location. Genome positions were obtained from the NCBI genome database. MAF, minor allele frequency, presented as percentages for each SNP. UTR, untranslated region. Coding syn., Coding synonymous.
SORT1 single marker (SNP) frequencies and associations with risk of Alzheimer’s disease
| SNP | Genotype | AD (%) | Control (%) | ORadj (95% CI) | padj |
| rs646776 | CC | 27 (4.4) | 70 (6.4) | ||
| CT | 221 (36.2) | 388 (35.5) | 1.0 (0.8–1.2) | 0.81 | |
| TT | 362 (59.3) | 636 (58.1) | |||
| rs464218 | GG | 124 (20.3) | 254 (23.1) | ||
| GA | 308 (50.5) | 527 (47.9) | 1.0 (0.8–1.2) | 0.88 | |
| AA | 178 (29.2) | 319 (29.0) | |||
| rs17585355 | CC | 2 (0.3) | 3 (0.3) | ||
| CA | 64 (10.4) | 142 (12.9) | 0.8 (0.6–1.2) | 0.27 | |
| AA | 552 (89.3) | 952 (86.8) | |||
| rs11102972 | CC | 33 (5.5) | 59 (5.4) | ||
| CT | 192 (31.7) | 405 (37.2) | 0.9 (0.7–1.1) | 0.15 | |
| TT | 380 (62.8) | 626 (57.4) | |||
| rs7536292 | CC | 23 (3.8) | 30 (2.7) | ||
| CT | 177 (29.0) | 311 (28.3) | 1.2 (0.9–1.4) | 0.17 | |
| TT | 410 (67.2) | 757 (68.9) | |||
| rs11142 | AA | 50 (8.3) | 99 (9.3) | ||
| AG | 239 (39.8) | 466 (44.0) | 0.9 (0.7–1.1) | 0.17 | |
| GG | 311 (51.8) | 494 (46.6) | |||
| rs17646665 | GG | 0 (0.0) | 7 (0.6) | ||
| GA | 64 (10.5) | 159 (14.5) | 0.6 (0.4–0.8) | ||
| AA | 547 (89.5) | 930 (84.9) | |||
| rs1149175 | AA | 17 (2.8) | 25 (2.3) | ||
| AG | 133 (21.6) | 279 (25.4) | 0.9 (0.7–1.1) | 0.35 | |
| GG | 466 (75.6) | 796 (72.4) | |||
| rs12037569 | TT | 14 (2.3) | 24 (2.2) | ||
| TG | 158 (25.9) | 285 (26.0) | 1.0 (0.8–1.3) | 0.75 | |
| GG | 437 (71.8) | 786 (71.8) | |||
| rs72646553 | CC | 33 (5.6) | 58 (5.4) | ||
| CG | 169 (28.7) | 398 (36.7) | 0.8 (0.7–1.0) | 0.05 | |
| GG | 386 (65.6) | 628 (57.9) |
Genotype data are presented as absolute numbers (percentages). OR, odds ratio per minor allele; CI, confidence interval; ORadj, adjusted odds ratio; padj, adjusted p-value using covariates. P-values were calculated using a logistic regression model adjusted for sex and number of APOE ɛ4 alleles. Bold numbers indicate p-values <0.05.
Fig.2The regional LD plot was created from a published CEU population panel for rs17646665, located in SORT1 (marked by the arrow) with 500 kb flanking genomic regions on each side. The r2 threshold was set to 0.8 and six SNPs were identified with r2 >0.8 for this region, all of which were located in other genes than SORT1. The SNPs are indicated by the numbers over the boxes (1: SYPL2 (rs2272272), 2: AMIGO1 (rs17575427), 3: 5’ of GPR61 (rs552101), 4: between AMIGO1 and GPR61 (rs56018934), 5: GNAI3 (rs1279195) and 6: GSTM4 (rs650985)).