Literature DB >> 27392858

Artificial Neural Networks Link One-Carbon Metabolism to Gene-Promoter Methylation in Alzheimer's Disease.

Enzo Grossi1,2, Andrea Stoccoro3,4, Pierpaola Tannorella3, Lucia Migliore3,5, Fabio Coppedè3,5.   

Abstract

BACKGROUND: There is increasing interest in DNA methylation studies in Alzheimer's disease (AD), but little is still known concerning the relationship between gene-promoter methylation and circulating biomarkers of one-carbon metabolism in patients.
OBJECTIVE: To detect the connections among circulating folate, homocysteine (hcy) and vitamin B12 levels and promoter methylation levels of PSEN1, BACE1, DNMT1, DNMT3A, DNMT3B, and MTHFR genes in blood DNA.
METHODS: We applied a data mining system called Auto Contractive Map to an existing database of 100 AD and 100 control individuals.
RESULTS: Low vitamin B12 was linked to the AD condition, to low folates, and to high hcy. Low PSEN1 methylation was linked to low folate levels as well as to low promoter methylation of BACE1 and DNMTs genes. Low hcy was linked to controls, to high folates and vitamin B12, as well as to high methylation levels of most of the studied genes.
CONCLUSIONS: The present pilot study suggests that promoter methylation levels of the studied genes are linked to circulating levels of folates, hcy, and vitamin B12.

Entities:  

Keywords:  Alzheimer’s disease; BACE1; DNA methylation; DNMT; MTHFR; PSEN1; folate; homocysteine; vitamin B12

Mesh:

Substances:

Year:  2016        PMID: 27392858     DOI: 10.3233/JAD-160210

Source DB:  PubMed          Journal:  J Alzheimers Dis        ISSN: 1387-2877            Impact factor:   4.472


  17 in total

1.  CpG and non-CpG Presenilin1 methylation pattern in course of neurodevelopment and neurodegeneration is associated with gene expression in human and murine brain.

Authors:  Noemi Monti; Rosaria A Cavallaro; Andrea Stoccoro; Vincenzina Nicolia; Sigfrido Scarpa; Gabor G Kovacs; Maria Teresa Fiorenza; Marco Lucarelli; Eleonora Aronica; Isidre Ferrer; Fabio Coppedè; Aron M Troen; Andrea Fuso
Journal:  Epigenetics       Date:  2020-02-05       Impact factor: 4.528

2.  Blood DNA methylation as a potential biomarker of dementia: A systematic review.

Authors:  Peter D Fransquet; Paul Lacaze; Richard Saffery; John McNeil; Robyn Woods; Joanne Ryan
Journal:  Alzheimers Dement       Date:  2017-11-08       Impact factor: 21.566

3.  Epigenetic Regulation of Amyloid-beta Metabolism in Alzheimer's Disease.

Authors:  Chuan He; Zhong-Sheng Huang; Chao-Chao Yu; Hai-Hua Wang; Hua Zhou; Li-Hong Kong
Journal:  Curr Med Sci       Date:  2021-01-11

Review 4.  Gene-environment interactions in Alzheimer disease: the emerging role of epigenetics.

Authors:  Lucia Migliore; Fabio Coppedè
Journal:  Nat Rev Neurol       Date:  2022-09-30       Impact factor: 44.711

5.  Deep learning-based classification of multi-categorical Alzheimer's disease data.

Authors:  David S Cohen; Kristy A Carpenter; Juliet T Jarrell; Xudong Huang
Journal:  Curr Neurobiol       Date:  2019-10

6.  Use of an Artificial Neural Network to Identify Patient Clusters in a Large Cohort of Patients with Melanoma by Simultaneous Analysis of Costs and Clinical Characteristics.

Authors:  Giovanni Damiani; Alessandra Buja; Enzo Grossi; Michele Rivera; Anna De Polo; Giuseppe De Luca; Manuel Zorzi; Antonella Vecchiato; Paolo Del Fiore; Mario Saia; Vincenzo Baldo; Massimo Rugge; Carlo Riccardo Rossi; Gianfranco Damiani
Journal:  Acta Derm Venereol       Date:  2020-11-18       Impact factor: 3.875

7.  Gene-Specific Methylation Analysis in Thymomas of Patients with Myasthenia Gravis.

Authors:  Angela Lopomo; Roberta Ricciardi; Michelangelo Maestri; Anna De Rosa; Franca Melfi; Marco Lucchi; Alfredo Mussi; Fabio Coppedè; Lucia Migliore
Journal:  Int J Mol Sci       Date:  2016-12-16       Impact factor: 5.923

8.  Artificial neural network analysis of bone quality DXA parameters response to teriparatide in fractured osteoporotic patients.

Authors:  Carmelo Messina; Luca Petruccio Piodi; Enzo Grossi; Cristina Eller-Vainicher; Maria Luisa Bianchi; Sergio Ortolani; Marco Di Stefano; Luca Rinaudo; Luca Maria Sconfienza; Fabio Massimo Ulivieri
Journal:  PLoS One       Date:  2020-03-11       Impact factor: 3.240

Review 9.  Abnormal Homocysteine Metabolism: An Insight of Alzheimer's Disease from DNA Methylation.

Authors:  Tingting Pi; Bo Liu; Jingshan Shi
Journal:  Behav Neurol       Date:  2020-09-08       Impact factor: 3.342

10.  Association of Polymorphisms in Genes Involved in One-Carbon Metabolism with MTHFR Methylation Levels.

Authors:  Fabio Coppedè; Andrea Stoccoro; Pierpaola Tannorella; Roberta Gallo; Vanessa Nicolì; Lucia Migliore
Journal:  Int J Mol Sci       Date:  2019-07-31       Impact factor: 6.208

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