Literature DB >> 27390896

Targeting recognition surfaces on natural proteins with peptidic foldamers.

James W Checco1, Samuel H Gellman2.   

Abstract

Molecules intended to antagonize protein-protein interactions or augment polypeptide-based signaling must bind tightly to large and specific surfaces on target proteins. Some types of unnatural oligomers with discrete folding propensities ('foldamers') have recently been shown to display this capability. This review covers important recent advances among several classes of foldamers, including α-peptides with secondary structures stabilized by covalent bonds, d-α-peptides, α/β-peptides and oligo-oxopiperazines. Recent advances in this area have involved enhancing membrane permeability to provide access to intracellular protein targets, improving pharmacokinetics and duration of action in vivo, and developing strategies appropriate for targeting large and irregularly-shaped protein surfaces.
Copyright © 2016. Published by Elsevier Ltd.

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Year:  2016        PMID: 27390896      PMCID: PMC5108092          DOI: 10.1016/j.sbi.2016.06.014

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  76 in total

1.  Extending foldamer design beyond α-helix mimicry: α/β-peptide inhibitors of vascular endothelial growth factor signaling.

Authors:  Holly S Haase; Kimberly J Peterson-Kaufman; Sheeny K Lan Levengood; James W Checco; William L Murphy; Samuel H Gellman
Journal:  J Am Chem Soc       Date:  2012-05-01       Impact factor: 15.419

2.  Stabilizing the pro-apoptotic BimBH3 helix (BimSAHB) does not necessarily enhance affinity or biological activity.

Authors:  Toru Okamoto; Kerry Zobel; Anna Fedorova; Clifford Quan; Hong Yang; Wayne J Fairbrother; David C S Huang; Brian J Smith; Kurt Deshayes; Peter E Czabotar
Journal:  ACS Chem Biol       Date:  2012-12-10       Impact factor: 5.100

Review 3.  Peptide stapling techniques based on different macrocyclisation chemistries.

Authors:  Yu Heng Lau; Peterson de Andrade; Yuteng Wu; David R Spring
Journal:  Chem Soc Rev       Date:  2014-09-08       Impact factor: 54.564

4.  T cell determinants incorporating beta-amino acid residues are protease resistant and remain immunogenic in vivo.

Authors:  Andrew I Webb; Michelle A Dunstone; Nicholas A Williamson; Jason D Price; Andrea de Kauwe; Weisan Chen; Aaron Oakley; Patrick Perlmutter; James McCluskey; Marie-Isabel Aguilar; Jamie Rossjohn; Anthony W Purcell
Journal:  J Immunol       Date:  2005-09-15       Impact factor: 5.422

5.  Residue-Based Preorganization of BH3-Derived α/β-Peptides: Modulating Affinity, Selectivity and Proteolytic Susceptibility in α-Helix Mimics.

Authors:  Kimberly J Peterson-Kaufman; Holly S Haase; Melissa D Boersma; Erinna F Lee; W Douglas Fairlie; Samuel H Gellman
Journal:  ACS Chem Biol       Date:  2015-05-07       Impact factor: 5.100

6.  Enhancement of α-helix mimicry by an α/β-peptide foldamer via incorporation of a dense ionic side-chain array.

Authors:  Lisa M Johnson; David E Mortenson; Hyun Gi Yun; W Seth Horne; Thomas J Ketas; Min Lu; John P Moore; Samuel H Gellman
Journal:  J Am Chem Soc       Date:  2012-04-23       Impact factor: 15.419

7.  A Potent d-Protein Antagonist of VEGF-A is Nonimmunogenic, Metabolically Stable, and Longer-Circulating in Vivo.

Authors:  Maruti Uppalapati; Dong Jun Lee; Kalyaneswar Mandal; Hongyan Li; Les P Miranda; Joshua Lowitz; John Kenney; Jarrett J Adams; Dana Ault-Riché; Stephen B H Kent; Sachdev S Sidhu
Journal:  ACS Chem Biol       Date:  2016-02-03       Impact factor: 5.100

8.  Beta-peptidic peptidomimetics.

Authors:  Dieter Seebach; James Gardiner
Journal:  Acc Chem Res       Date:  2008-06-26       Impact factor: 22.384

9.  Crystal structure of the β2 adrenergic receptor-Gs protein complex.

Authors:  Søren G F Rasmussen; Brian T DeVree; Yaozhong Zou; Andrew C Kruse; Ka Young Chung; Tong Sun Kobilka; Foon Sun Thian; Pil Seok Chae; Els Pardon; Diane Calinski; Jesper M Mathiesen; Syed T A Shah; Joseph A Lyons; Martin Caffrey; Samuel H Gellman; Jan Steyaert; Georgios Skiniotis; William I Weis; Roger K Sunahara; Brian K Kobilka
Journal:  Nature       Date:  2011-07-19       Impact factor: 49.962

10.  Selective VIP Receptor Agonists Facilitate Immune Transformation for Dopaminergic Neuroprotection in MPTP-Intoxicated Mice.

Authors:  Katherine E Olson; Lisa M Kosloski-Bilek; Kristi M Anderson; Breha J Diggs; Barbara E Clark; John M Gledhill; Scott J Shandler; R Lee Mosley; Howard E Gendelman
Journal:  J Neurosci       Date:  2015-12-16       Impact factor: 6.167

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  19 in total

Review 1.  Reductionist Approach in Peptide-Based Nanotechnology.

Authors:  Ehud Gazit
Journal:  Annu Rev Biochem       Date:  2018-06-20       Impact factor: 23.643

2.  Thermodynamic Scale of β-Amino Acid Residue Propensities for an α-Helix-like Conformation.

Authors:  Brian F Fisher; Seong Ho Hong; Samuel H Gellman
Journal:  J Am Chem Soc       Date:  2018-07-19       Impact factor: 15.419

3.  Heterogeneous-Backbone Foldamer Mimics of Zinc Finger Tertiary Structure.

Authors:  Kelly L George; W Seth Horne
Journal:  J Am Chem Soc       Date:  2017-06-05       Impact factor: 15.419

4.  Receptor selectivity from minimal backbone modification of a polypeptide agonist.

Authors:  Shi Liu; Ross W Cheloha; Tomoyuki Watanabe; Thomas J Gardella; Samuel H Gellman
Journal:  Proc Natl Acad Sci U S A       Date:  2018-11-15       Impact factor: 11.205

5.  Characterization of signal bias at the GLP-1 receptor induced by backbone modification of GLP-1.

Authors:  Marlies V Hager; Lachlan Clydesdale; Samuel H Gellman; Patrick M Sexton; Denise Wootten
Journal:  Biochem Pharmacol       Date:  2017-03-29       Impact factor: 5.858

6.  Evaluation of sequence variability in HIV-1 gp41 C-peptide helix-grafted proteins.

Authors:  Rachel L Tennyson; Susanne N Walker; Terumasa Ikeda; Reuben S Harris; Brian R McNaughton
Journal:  Bioorg Med Chem       Date:  2017-08-01       Impact factor: 3.641

7.  Foldamer Tertiary Structure through Sequence-Guided Protein Backbone Alteration.

Authors:  Kelly L George; W Seth Horne
Journal:  Acc Chem Res       Date:  2018-04-19       Impact factor: 22.384

8.  Recognition of Class II MHC Peptide Ligands That Contain β-Amino Acids.

Authors:  Ross W Cheloha; Andrew W Woodham; Djenet Bousbaine; Tong Wang; Shi Liu; John Sidney; Alessandro Sette; Samuel H Gellman; Hidde L Ploegh
Journal:  J Immunol       Date:  2019-08-07       Impact factor: 5.422

Review 9.  Inhibitors of protein-protein interactions (PPIs): an analysis of scaffold choices and buried surface area.

Authors:  Xu Ran; Jason E Gestwicki
Journal:  Curr Opin Chem Biol       Date:  2018-06-13       Impact factor: 8.822

10.  Development of Potent, Protease-Resistant Agonists of the Parathyroid Hormone Receptor with Broad β Residue Distribution.

Authors:  Ross W Cheloha; Bingming Chen; Niyanta N Kumar; Tomoyuki Watanabe; Robert G Thorne; Lingjun Li; Thomas J Gardella; Samuel H Gellman
Journal:  J Med Chem       Date:  2017-10-24       Impact factor: 7.446

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