Literature DB >> 27386164

A joint graph inference case study: the C. elegans chemical and electrical connectomes.

Li Chen1, Joshua T Vogelstein2, Vince Lyzinski3, Carey E Priebe4.   

Abstract

We investigate joint graph inference for the chemical and electrical connectomes of the Caenorhabditis elegans roundworm. The C. elegans connectomes consist of [Formula: see text] non-isolated neurons with known functional attributes, and there are two types of synaptic connectomes, resulting in a pair of graphs. We formulate our joint graph inference from the perspectives of seeded graph matching and joint vertex classification. Our results suggest that connectomic inference should proceed in the joint space of the two connectomes, which has significant neuroscientific implications.

Entities:  

Keywords:  fusion inference; joint graph inference; joint vertex classification; neural connectome; omnibus embedding; seeded graph matching

Year:  2016        PMID: 27386164      PMCID: PMC4911995          DOI: 10.1080/21624054.2016.1142041

Source DB:  PubMed          Journal:  Worm        ISSN: 2162-4046


  11 in total

1.  Model-based morphological segmentation and labeling of coronary angiograms.

Authors:  K Haris; S N Efstratiadis; N Maglaveras; C Pappas; J Gourassas; G Louridas
Journal:  IEEE Trans Med Imaging       Date:  1999-10       Impact factor: 10.048

2.  An eigenspace projection clustering method for inexact graph matching.

Authors:  Terry Caelli; Serhiy Kosinov
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2004-04       Impact factor: 6.226

3.  The structure of the nervous system of the nematode Caenorhabditis elegans.

Authors:  J G White; E Southgate; J N Thomson; S Brenner
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  1986-11-12       Impact factor: 6.237

4.  Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans.

Authors:  A Fire; S Xu; M K Montgomery; S A Kostas; S E Driver; C C Mello
Journal:  Nature       Date:  1998-02-19       Impact factor: 49.962

5.  The embryonic cell lineage of the nematode Caenorhabditis elegans.

Authors:  J E Sulston; E Schierenberg; J G White; J N Thomson
Journal:  Dev Biol       Date:  1983-11       Impact factor: 3.582

6.  The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14.

Authors:  R C Lee; R L Feinbaum; V Ambros
Journal:  Cell       Date:  1993-12-03       Impact factor: 41.582

7.  The C. elegans cell death gene ced-3 encodes a protein similar to mammalian interleukin-1 beta-converting enzyme.

Authors:  J Yuan; S Shaham; S Ledoux; H M Ellis; H R Horvitz
Journal:  Cell       Date:  1993-11-19       Impact factor: 41.582

8.  Stochastic blockmodeling of the modules and core of the Caenorhabditis elegans connectome.

Authors:  Dragana M Pavlovic; Petra E Vértes; Edward T Bullmore; William R Schafer; Thomas E Nichols
Journal:  PLoS One       Date:  2014-07-02       Impact factor: 3.240

9.  The rich club of the C. elegans neuronal connectome.

Authors:  Emma K Towlson; Petra E Vértes; Sebastian E Ahnert; William R Schafer; Edward T Bullmore
Journal:  J Neurosci       Date:  2013-04-10       Impact factor: 6.167

10.  Global alignment of protein-protein interaction networks by graph matching methods.

Authors:  Mikhail Zaslavskiy; Francis Bach; Jean-Philippe Vert
Journal:  Bioinformatics       Date:  2009-06-15       Impact factor: 6.937

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  3 in total

1.  Matchability of heterogeneous networks pairs.

Authors:  Vince Lyzinski; Daniel L Sussman
Journal:  Inf inference       Date:  2020-01-06

2.  Graph Matching between Bipartite and Unipartite Networks: to Collapse, or not to Collapse, that is the Question.

Authors:  Jesús Arroyo; Carey E Priebe; Vince Lyzinski
Journal:  IEEE Trans Netw Sci Eng       Date:  2021-06-04

Review 3.  Toward Community-Driven Big Open Brain Science: Open Big Data and Tools for Structure, Function, and Genetics.

Authors:  Adam S Charles; Benjamin Falk; Nicholas Turner; Talmo D Pereira; Daniel Tward; Benjamin D Pedigo; Jaewon Chung; Randal Burns; Satrajit S Ghosh; Justus M Kebschull; William Silversmith; Joshua T Vogelstein
Journal:  Annu Rev Neurosci       Date:  2020-04-13       Impact factor: 15.553

  3 in total

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