Literature DB >> 27378083

Transmembrane dynamics of the Thr-5 phosphorylated sarcolipin pentameric channel.

Yipeng Cao1, Xue Wu1, Xinyu Wang1, Haiying Sun1, Imshik Lee2.   

Abstract

Sarcolipin (SLN), an important membrane protein expressed in the sarcoplasmic reticulum (SR), regulates muscle contractions in cardiac and skeletal muscle. The phosphorylation at amino acid Thr5 of the SLN protein modulates the amount of Ca(2+) that passes through the SR. Using molecular dynamics simulation, we evaluated the phosphorylation at Thr5 of pentameric SLN (phospho-SLN) channel's energy barrier and pore characteristics by calculating the potential of mean force (PMF) along the channel pore and determining the diffusion coefficient. The results indicate that pentameric phospho-SLN promotes penetration of monovalent and divalent ions through the channel. The analysis of PMF, pore radius and diffusion coefficient indicates that Leu21 is the hydrophobic gate of the pentameric SLN channel. In the channel, water molecules near the Leu21 pore demonstrated a clear hydrated-dehydrated transition; however, the mutation of Leu21 to an Alanine (L21A) destroyed the hydrated-dehydrated transitions. These water-dynamic behaviors and PMF confirm that Leu21 is the key residue that regulates the ion permeability of the pentameric SLN channel. These results provide the structural-basis insights and molecular-dynamic information that are needed to understand the regulatory mechanisms of ion permeability in the pentameric SLN channel.
Copyright © 2016 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Ion-channel; MD simulation; PMF; Phosphorylation; Sarcolipin

Mesh:

Substances:

Year:  2016        PMID: 27378083     DOI: 10.1016/j.abb.2016.06.016

Source DB:  PubMed          Journal:  Arch Biochem Biophys        ISSN: 0003-9861            Impact factor:   4.013


  4 in total

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Authors:  Yipeng Cao; Rui Yang; Imshik Lee; Wenwen Zhang; Jiana Sun; Xiangfei Meng; Wei Wang
Journal:  PLoS One       Date:  2021-03-18       Impact factor: 3.240

2.  Homologous cardiac calcium pump regulators phospholamban and sarcolipin adopt distinct oligomeric states in the membrane.

Authors:  Andy Y Liu; Rodrigo Aguayo-Ortiz; Guadalupe Guerrero-Serna; Nulang Wang; Muriel G Blin; Daniel R Goldstein; L Michel Espinoza-Fonseca
Journal:  Comput Struct Biotechnol J       Date:  2021-12-28       Impact factor: 7.271

3.  Computational Study of the Ion and Water Permeation and Transport Mechanisms of the SARS-CoV-2 Pentameric E Protein Channel.

Authors:  Yipeng Cao; Rui Yang; Wei Wang; Imshik Lee; Ruiping Zhang; Wenwen Zhang; Jiana Sun; Bo Xu; Xiangfei Meng
Journal:  Front Mol Biosci       Date:  2020-09-23

4.  Sarcolipin Exhibits Abundant RNA Transcription and Minimal Protein Expression in Horse Gluteal Muscle.

Authors:  Joseph M Autry; Christine B Karim; Sudeep Perumbakkam; Carrie J Finno; Erica C McKenzie; David D Thomas; Stephanie J Valberg
Journal:  Vet Sci       Date:  2020-11-13
  4 in total

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