Literature DB >> 27376950

Alternative splicing of inner-ear-expressed genes.

Yanfei Wang1, Yueyue Liu1, Hongyun Nie1, Xin Ma2, Zhigang Xu3.   

Abstract

Alternative splicing plays a fundamental role in the development and physiological function of the inner ear. Inner-ear-specific gene splicing is necessary to establish the identity and maintain the function of the inner ear. For example, exon 68 of Cadherin 23 (Cdh23) gene is subject to inner-ear-specific alternative splicing, and as a result, Cdh23(+ 68) is only expressed in inner ear hair cells. Alternative splicing along the tonotopic axis of the cochlea contributes to frequency tuning, particularly in lower vertebrates, such as chickens and turtles. Differential splicing of Kcnma1, which encodes for the α subunit of the Ca(2+)-activated K(+) channel (BK channel), has been suggested to affect the channel gating properties and is important for frequency tuning. Consequently, deficits in alternative splicing have been shown to cause hearing loss, as we can observe in Bronx Waltzer (bv) mice and Sfswap mutant mice. Despite the advances in this field, the regulation of alternative splicing in the inner ear remains elusive. Further investigation is also needed to clarify the mechanism of hearing loss caused by alternative splicing deficits.

Entities:  

Keywords:  alternative splicing; hair cells; hearing loss; inner ear

Mesh:

Substances:

Year:  2016        PMID: 27376950     DOI: 10.1007/s11684-016-0454-y

Source DB:  PubMed          Journal:  Front Med        ISSN: 2095-0217            Impact factor:   4.592


  89 in total

1.  SF2 and SRp55 regulation of CD45 exon 4 skipping during T cell activation.

Authors:  R Lemaire; A Winne; M Sarkissian; R Lafyatis
Journal:  Eur J Immunol       Date:  1999-03       Impact factor: 5.532

2.  Highly specific alternative splicing of transcripts encoding BK channels in the chicken's cochlea is a minor determinant of the tonotopic gradient.

Authors:  Soledad Miranda-Rottmann; Andrei S Kozlov; A J Hudspeth
Journal:  Mol Cell Biol       Date:  2010-05-17       Impact factor: 4.272

3.  Localization of the bronx waltzer (bv) deafness gene to mouse chromosome 5.

Authors:  T J Bussoli; A Kelly; K P Steel
Journal:  Mamm Genome       Date:  1997-10       Impact factor: 2.957

4.  The MicroRNA miR-124 promotes neuronal differentiation by triggering brain-specific alternative pre-mRNA splicing.

Authors:  Eugene V Makeyev; Jiangwen Zhang; Monica A Carrasco; Tom Maniatis
Journal:  Mol Cell       Date:  2007-08-03       Impact factor: 17.970

Review 5.  Development of tonotopy in the auditory periphery.

Authors:  Zoe F Mann; Matthew W Kelley
Journal:  Hear Res       Date:  2011-01-27       Impact factor: 3.208

Review 6.  Splicing regulation in neurologic disease.

Authors:  Donny D Licatalosi; Robert B Darnell
Journal:  Neuron       Date:  2006-10-05       Impact factor: 17.173

7.  The Notch ligand Jagged1 is required for inner ear sensory development.

Authors:  A E Kiernan; N Ahituv; H Fuchs; R Balling; K B Avraham; K P Steel; M Hrabé de Angelis
Journal:  Proc Natl Acad Sci U S A       Date:  2001-03-20       Impact factor: 11.205

8.  Mutations in Cdh23, encoding a new type of cadherin, cause stereocilia disorganization in waltzer, the mouse model for Usher syndrome type 1D.

Authors:  F Di Palma; R H Holme; E C Bryda; I A Belyantseva; R Pellegrino; B Kachar; K P Steel; K Noben-Trauth
Journal:  Nat Genet       Date:  2001-01       Impact factor: 38.330

9.  Cochlear inner hair cells exist transiently in the fetal Bronx Waltzer (bv/bv) mouse.

Authors:  D S Whitlon; C Gabel; X Zhang
Journal:  J Comp Neurol       Date:  1996-01-15       Impact factor: 3.215

10.  Mutational spectrum of MYO15A: the large N-terminal extension of myosin XVA is required for hearing.

Authors:  Nevra Nal; Zubair M Ahmed; Engin Erkal; Ozgül M Alper; Güven Lüleci; Oktay Dinç; Ali Muhammad Waryah; Quratul Ain; Saba Tasneem; Tayyab Husnain; Parna Chattaraj; Saima Riazuddin; Erich Boger; Manju Ghosh; Madhulika Kabra; Sheikh Riazuddin; Robert J Morell; Thomas B Friedman
Journal:  Hum Mutat       Date:  2007-10       Impact factor: 4.878

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  6 in total

1.  Curating Clinically Relevant Transcripts for the Interpretation of Sequence Variants.

Authors:  Marina T DiStefano; Sarah E Hemphill; Brandon J Cushman; Mark J Bowser; Elizabeth Hynes; Andrew R Grant; Rebecca K Siegert; Andrea M Oza; Michael A Gonzalez; Sami S Amr; Heidi L Rehm; Ahmad N Abou Tayoun
Journal:  J Mol Diagn       Date:  2018-08-08       Impact factor: 5.568

2.  Rbm24 regulates inner-ear-specific alternative splicing and is essential for maintaining auditory and motor coordination.

Authors:  Longqing Zheng; Huijun Yuan; Mengkai Zhang; Cuicui Wang; Xuemin Cai; Jing Liu; Xiu Qin Xu
Journal:  RNA Biol       Date:  2020-09-20       Impact factor: 4.652

3.  Characterization of the transcriptomes of Atoh1-induced hair cells in the mouse cochlea.

Authors:  Li-Man Liu; Li-Ping Zhao; Ling-Jie Wu; Luo Guo; Wen-Yan Li; Yan Chen
Journal:  Am J Stem Cells       Date:  2020-02-15

4.  Angulin proteins ILDR1 and ILDR2 regulate alternative pre-mRNA splicing through binding to splicing factors TRA2A, TRA2B, or SRSF1.

Authors:  Yueyue Liu; Hongyun Nie; Chengcheng Liu; Xiaoyan Zhai; Qing Sang; Yanfei Wang; Deli Shi; Lei Wang; Zhigang Xu
Journal:  Sci Rep       Date:  2017-08-07       Impact factor: 4.379

Review 5.  Inherited Retinal Disease Therapies Targeting Precursor Messenger Ribonucleic Acid.

Authors:  Di Huang; Sue Fletcher; Steve D Wilton; Norman Palmer; Samuel McLenachan; David A Mackey; Fred K Chen
Journal:  Vision (Basel)       Date:  2017-09-01

6.  Alternative Splicing of Cdh23 Exon 68 Is Regulated by RBM24, RBM38, and PTBP1.

Authors:  Nana Li; Haibo Du; Rui Ren; Yanfei Wang; Zhigang Xu
Journal:  Neural Plast       Date:  2020-07-25       Impact factor: 3.599

  6 in total

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