Literature DB >> 27363429

Collaborative targeted maximum likelihood estimation for variable importance measure: Illustration for functional outcome prediction in mild traumatic brain injuries.

Romain Pirracchio1, John K Yue2,3, Geoffrey T Manley2,3, Mark J van der Laan4, Alan E Hubbard4.   

Abstract

Standard statistical practice used for determining the relative importance of competing causes of disease typically relies on ad hoc methods, often byproducts of machine learning procedures (stepwise regression, random forest, etc.). Causal inference framework and data-adaptive methods may help to tailor parameters to match the clinical question and free one from arbitrary modeling assumptions. Our focus is on implementations of such semiparametric methods for a variable importance measure (VIM). We propose a fully automated procedure for VIM based on collaborative targeted maximum likelihood estimation (cTMLE), a method that optimizes the estimate of an association in the presence of potentially numerous competing causes. We applied the approach to data collected from traumatic brain injury patients, specifically a prospective, observational study including three US Level-1 trauma centers. The primary outcome was a disability score (Glasgow Outcome Scale - Extended (GOSE)) collected three months post-injury. We identified clinically important predictors among a set of risk factors using a variable importance analysis based on targeted maximum likelihood estimators (TMLE) and on cTMLE. Via a parametric bootstrap, we demonstrate that the latter procedure has the potential for robust automated estimation of variable importance measures based upon machine-learning algorithms. The cTMLE estimator was associated with substantially less positivity bias as compared to TMLE and larger coverage of the 95% CI. This study confirms the power of an automated cTMLE procedure that can target model selection via machine learning to estimate VIMs in complicated, high-dimensional data.

Entities:  

Keywords:  Variable importance measure; causal inference; collaborative targeted maximum likelihood; high-dimensional data; positivity; semi-parametric

Mesh:

Year:  2016        PMID: 27363429      PMCID: PMC5589499          DOI: 10.1177/0962280215627335

Source DB:  PubMed          Journal:  Stat Methods Med Res        ISSN: 0962-2802            Impact factor:   3.021


  20 in total

1.  Diagnosing and responding to violations in the positivity assumption.

Authors:  Maya L Petersen; Kristin E Porter; Susan Gruber; Yue Wang; Mark J van der Laan
Journal:  Stat Methods Med Res       Date:  2010-10-28       Impact factor: 3.021

2.  Doubly robust estimation in missing data and causal inference models.

Authors:  Heejung Bang; James M Robins
Journal:  Biometrics       Date:  2005-12       Impact factor: 2.571

3.  Super learner.

Authors:  Mark J van der Laan; Eric C Polley; Alan E Hubbard
Journal:  Stat Appl Genet Mol Biol       Date:  2007-09-16

Review 4.  Analyzing outcome of treatment of severe head injury: a review and update on advancing the use of the Glasgow Outcome Scale.

Authors:  G M Teasdale; L E Pettigrew; J T Wilson; G Murray; B Jennett
Journal:  J Neurotrauma       Date:  1998-08       Impact factor: 5.269

5.  An application of collaborative targeted maximum likelihood estimation in causal inference and genomics.

Authors:  Susan Gruber; Mark J van der Laan
Journal:  Int J Biostat       Date:  2010-05-17       Impact factor: 0.968

6.  Targeted maximum likelihood based causal inference: Part II.

Authors:  Mark J van der Laan
Journal:  Int J Biostat       Date:  2010-02-22       Impact factor: 0.968

7.  Predictors of postconcussive symptoms 3 months after mild traumatic brain injury.

Authors:  Jennie Ponsford; Peter Cameron; Mark Fitzgerald; Michele Grant; Antonina Mikocka-Walus; Michael Schönberger
Journal:  Neuropsychology       Date:  2012-04-02       Impact factor: 3.295

8.  Estimation of a non-parametric variable importance measure of a continuous exposure.

Authors:  Antoine Chambaz; Pierre Neuvial; Mark J van der Laan
Journal:  Electron J Stat       Date:  2012       Impact factor: 1.125

9.  Time-dependent prediction and evaluation of variable importance using superlearning in high-dimensional clinical data.

Authors:  Alan Hubbard; Ivan Diaz Munoz; Anna Decker; John B Holcomb; Martin A Schreiber; Eileen M Bulger; Karen J Brasel; Erin E Fox; Deborah J del Junco; Charles E Wade; Mohammad H Rahbar; Bryan A Cotton; Herb A Phelan; John G Myers; Louis H Alarcon; Peter Muskat; Mitchell J Cohen
Journal:  J Trauma Acute Care Surg       Date:  2013-07       Impact factor: 3.313

10.  Clinical policy: neuroimaging and decisionmaking in adult mild traumatic brain injury in the acute setting.

Authors:  Andy S Jagoda; Jeffrey J Bazarian; John J Bruns; Stephen V Cantrill; Alisa D Gean; Patricia Kunz Howard; Jamshid Ghajar; Silvana Riggio; David W Wright; Robert L Wears; Aric Bakshy; Paula Burgess; Marlena M Wald; Rhonda R Whitson
Journal:  Ann Emerg Med       Date:  2008-12       Impact factor: 5.721

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  1 in total

1.  Targeted maximum likelihood estimation for a binary treatment: A tutorial.

Authors:  Miguel Angel Luque-Fernandez; Michael Schomaker; Bernard Rachet; Mireille E Schnitzer
Journal:  Stat Med       Date:  2018-04-23       Impact factor: 2.373

  1 in total

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