Literature DB >> 27359218

Protists and the Wild, Wild West of Gene Expression: New Frontiers, Lawlessness, and Misfits.

David Roy Smith1, Patrick J Keeling2.   

Abstract

The DNA double helix has been called one of life's most elegant structures, largely because of its universality, simplicity, and symmetry. The expression of information encoded within DNA, however, can be far from simple or symmetric and is sometimes surprisingly variable, convoluted, and wantonly inefficient. Although exceptions to the rules exist in certain model systems, the true extent to which life has stretched the limits of gene expression is made clear by nonmodel systems, particularly protists (microbial eukaryotes). The nuclear and organelle genomes of protists are subject to the most tangled forms of gene expression yet identified. The complicated and extravagant picture of the underlying genetics of eukaryotic microbial life changes how we think about the flow of genetic information and the evolutionary processes shaping it. Here, we discuss the origins, diversity, and growing interest in noncanonical protist gene expression and its relationship to genomic architecture.

Keywords:  RNA editing; constructive neutral evolution; mitochondrial transcription; plastid transcription; posttranscriptional processing; trans-splicing

Mesh:

Substances:

Year:  2016        PMID: 27359218     DOI: 10.1146/annurev-micro-102215-095448

Source DB:  PubMed          Journal:  Annu Rev Microbiol        ISSN: 0066-4227            Impact factor:   15.500


  6 in total

1.  Trypanosomatid mitochondrial RNA editing: dramatically complex transcript repertoires revealed with a dedicated mapping tool.

Authors:  Evgeny S Gerasimov; Anna A Gasparyan; Iosif Kaurov; Boris Tichý; Maria D Logacheva; Alexander A Kolesnikov; Julius Lukeš; Vyacheslav Yurchenko; Sara L Zimmer; Pavel Flegontov
Journal:  Nucleic Acids Res       Date:  2018-01-25       Impact factor: 16.971

2.  The origin of RNA interference: Adaptive or neutral evolution?

Authors:  Alessandro Torri; Johannes Jaeger; Thomas Pradeu; Maria-Carla Saleh
Journal:  PLoS Biol       Date:  2022-06-29       Impact factor: 9.593

3.  Pervasive Transcription of Mitochondrial, Plastid, and Nucleomorph Genomes across Diverse Plastid-Bearing Species.

Authors:  Matheus Sanitá Lima; David Roy Smith
Journal:  Genome Biol Evol       Date:  2017-10-01       Impact factor: 3.416

4.  Pervasive, Genome-Wide Transcription in the Organelle Genomes of Diverse Plastid-Bearing Protists.

Authors:  Matheus Sanitá Lima; David Roy Smith
Journal:  G3 (Bethesda)       Date:  2017-11-06       Impact factor: 3.154

5.  Unraveling chloroplast transcriptomes with ChloroSeq, an organelle RNA-Seq bioinformatics pipeline.

Authors:  David Roy Smith; Matheus Sanitá Lima
Journal:  Brief Bioinform       Date:  2017-11-01       Impact factor: 11.622

6.  Origins and Molecular Evolution of the NusG Paralog RfaH.

Authors:  Bing Wang; Vadim M Gumerov; Ekaterina P Andrianova; Igor B Zhulin; Irina Artsimovitch
Journal:  mBio       Date:  2020-10-27       Impact factor: 7.867

  6 in total

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