Literature DB >> 27358322

Gene Editing: Powerful New Tools for Nephrology Research and Therapy.

Ayano Miyagi1, Aiwu Lu1, Benjamin D Humphreys2.   

Abstract

Biologic research is experiencing a transformation brought about by the ability of programmable nucleases to manipulate the genome. In the recently developed CRISPR/Cas system, short RNA sequences guide the endonuclease Cas9 to any location in the genome, causing a DNA double-strand break (DSB). Repair of DSBs allows the introduction of targeted genetic manipulations with high precision. Cas9-mediated gene editing is simple, scalable, and rapid, and it can be applied to virtually any organism. Here, we summarize the development of modern gene editing techniques and the biology of DSB repair on which these techniques are based. We discuss technical points in applying this technology and review its use in model organisms. Finally, we describe prospects for the use of gene editing to treat human genetic diseases. This technology offers tremendous promise for equipping the nephrology research community to better model and ultimately, treat kidney diseases.
Copyright © 2016 by the American Society of Nephrology.

Entities:  

Keywords:  gene therapy; molecular genetics; transgenic mouse

Mesh:

Year:  2016        PMID: 27358322      PMCID: PMC5042678          DOI: 10.1681/ASN.2016020146

Source DB:  PubMed          Journal:  J Am Soc Nephrol        ISSN: 1046-6673            Impact factor:   10.121


  47 in total

1.  Double nicking by RNA-guided CRISPR Cas9 for enhanced genome editing specificity.

Authors:  F Ann Ran; Patrick D Hsu; Chie-Yu Lin; Jonathan S Gootenberg; Silvana Konermann; Alexandro E Trevino; David A Scott; Azusa Inoue; Shogo Matoba; Yi Zhang; Feng Zhang
Journal:  Cell       Date:  2013-08-29       Impact factor: 41.582

2.  A simple cipher governs DNA recognition by TAL effectors.

Authors:  Matthew J Moscou; Adam J Bogdanove
Journal:  Science       Date:  2009-12-11       Impact factor: 47.728

3.  Design of polydactyl zinc-finger proteins for unique addressing within complex genomes.

Authors:  Q Liu; D J Segal; J B Ghiara; C F Barbas
Journal:  Proc Natl Acad Sci U S A       Date:  1997-05-27       Impact factor: 11.205

4.  High-throughput screening of a CRISPR/Cas9 library for functional genomics in human cells.

Authors:  Yuexin Zhou; Shiyou Zhu; Changzu Cai; Pengfei Yuan; Chunmei Li; Yanyi Huang; Wensheng Wei
Journal:  Nature       Date:  2014-04-09       Impact factor: 49.962

5.  In vivo genome editing improves muscle function in a mouse model of Duchenne muscular dystrophy.

Authors:  Christopher E Nelson; Chady H Hakim; David G Ousterout; Pratiksha I Thakore; Eirik A Moreb; Ruth M Castellanos Rivera; Sarina Madhavan; Xiufang Pan; F Ann Ran; Winston X Yan; Aravind Asokan; Feng Zhang; Dongsheng Duan; Charles A Gersbach
Journal:  Science       Date:  2015-12-31       Impact factor: 47.728

6.  CRISPR interference limits horizontal gene transfer in staphylococci by targeting DNA.

Authors:  Luciano A Marraffini; Erik J Sontheimer
Journal:  Science       Date:  2008-12-19       Impact factor: 47.728

7.  MMEJ-assisted gene knock-in using TALENs and CRISPR-Cas9 with the PITCh systems.

Authors:  Tetsushi Sakuma; Shota Nakade; Yuto Sakane; Ken-Ichi T Suzuki; Takashi Yamamoto
Journal:  Nat Protoc       Date:  2015-12-17       Impact factor: 13.491

8.  CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III.

Authors:  Elitza Deltcheva; Krzysztof Chylinski; Cynthia M Sharma; Karine Gonzales; Yanjie Chao; Zaid A Pirzada; Maria R Eckert; Jörg Vogel; Emmanuelle Charpentier
Journal:  Nature       Date:  2011-03-31       Impact factor: 49.962

9.  Efficient design and assembly of custom TALEN and other TAL effector-based constructs for DNA targeting.

Authors:  Tomas Cermak; Erin L Doyle; Michelle Christian; Li Wang; Yong Zhang; Clarice Schmidt; Joshua A Baller; Nikunj V Somia; Adam J Bogdanove; Daniel F Voytas
Journal:  Nucleic Acids Res       Date:  2011-04-14       Impact factor: 16.971

10.  Improving CRISPR-Cas nuclease specificity using truncated guide RNAs.

Authors:  Yanfang Fu; Jeffry D Sander; Deepak Reyon; Vincent M Cascio; J Keith Joung
Journal:  Nat Biotechnol       Date:  2014-01-26       Impact factor: 54.908

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  10 in total

Review 1.  Immunologic Effects of the Renin-Angiotensin System.

Authors:  Steven D Crowley; Nathan P Rudemiller
Journal:  J Am Soc Nephrol       Date:  2017-02-01       Impact factor: 10.121

2.  KEAP1 Editing Using CRISPR/Cas9 for Therapeutic NRF2 Activation in Primary Human T Lymphocytes.

Authors:  Sanjeev Noel; Sul A Lee; Mohanraj Sadasivam; Abdel R A Hamad; Hamid Rabb
Journal:  J Immunol       Date:  2018-01-19       Impact factor: 5.422

3.  Intravital imaging of the kidney.

Authors:  Takashi Hato; Seth Winfree; Pierre C Dagher
Journal:  Methods       Date:  2017-04-12       Impact factor: 3.608

Review 4.  Genetic Kidney Diseases (GKDs) Modeling Using Genome Editing Technologies.

Authors:  Fernando Gómez-García; Raquel Martínez-Pulleiro; Noa Carrera; Catarina Allegue; Miguel A Garcia-Gonzalez
Journal:  Cells       Date:  2022-05-06       Impact factor: 7.666

Review 5.  Functional and therapeutic importance of purinergic signaling in polycystic kidney disease.

Authors:  Daria V Ilatovskaya; Oleg Palygin; Alexander Staruschenko
Journal:  Am J Physiol Renal Physiol       Date:  2016-09-21

Review 6.  CRISPR Gene Editing in the Kidney.

Authors:  Nelly M Cruz; Benjamin S Freedman
Journal:  Am J Kidney Dis       Date:  2018-03-30       Impact factor: 8.860

7.  CRISPR/Cas9 engineering of a KIM-1 reporter human proximal tubule cell line.

Authors:  Ruth Ann Veach; Matthew H Wilson
Journal:  PLoS One       Date:  2018-09-27       Impact factor: 3.240

8.  Integrate CRISPR/Cas9 for protein expression of HLA-B*38:68Q via precise gene editing.

Authors:  Yuxin Yin; Elaine F Reed; Qiuheng Zhang
Journal:  Sci Rep       Date:  2019-05-30       Impact factor: 4.379

9.  Endoplasmic reticulum stress and proteasome pathway involvement in human podocyte injury with a truncated COL4A3 mutation.

Authors:  Hui-Di Zhang; Jian-Ni Huang; Yun-Zi Liu; Hong Ren; Jing-Yuan Xie; Nan Chen
Journal:  Chin Med J (Engl)       Date:  2019-08-05       Impact factor: 2.628

10.  Advances in Clinical Research in Chronic Kidney Disease.

Authors:  Yutong Zou; Fang Liu; Mark E Cooper; Zhonglin Chai
Journal:  J Transl Int Med       Date:  2021-09-28
  10 in total

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