| Literature DB >> 27358012 |
Ruyan Fan1,2, Chuping Fan1, Jian Zhang1, Bo Wen1, Yefei Lei1, Chan Liu1, Lijuan Chen1, Wenpei Liu1, Chuan Wang3, Xiaowang Qu1.
Abstract
Respiratory syncytial virus (RSV) infection is the leading cause of acute respiratory tract disease in children less than 5 years old. The aim of this study was to further elucidate the molecular properties and clinical characteristics of RSV infection. The study sample included 238 patients <5 years old who were hospitalized with clinical symptoms of upper or lower respiratory tract infection (URTI or LRTI) in the Pediatric Department at the First People's Hospital of Chenzhou, South China in 2014. We subjected nasopharyngeal aspirate (NPA) or nasal swab (NS) samples from the patients to indirect fluorescence assay screens. RSV G genes were amplified by reverse transcription-PCR (RT-PCR) and sequenced. Of the 238 patients screened, 64 (26.8%) were confirmed to have RSV infections. Of those 64 confirmed RSV infection cases, 39 (60.9%) had subtype BA9, 13 (20.3%) had the recently identified subtype ON1, 11 (17.2%) had subtype NA1, and 1 (1.6%) had subtype GB2. The predominant presentation was LRTI with coughing, sputum production, fever, and wheezing. RSV subtype NA1 and BA9 infections were found mostly in infants, whereas the age distribution of subtype ON1 infections was more uniform across the age bands. Phylogenetic analysis indicated that, compared with the prototype strain A2, all ON1 and most NA1 isolates had lost one potential N-glycosylation site at amino acid 251 and 249 due to T251K and N249Y substitution, respectively. These findings suggest that NA1, BA9, and ON1 are the dominant RSV subtypes causing respiratory tract infections in young children presenting to the hospital in South China. J. Med. Virol. 89:213-221, 2017.Entities:
Keywords: attachment glycoprotein (G) gene; lower respiratory tract infections (LRTIs); respiratory syncytial virus (RSV; subtype BA9; subtype NA1; subtype ON1
Mesh:
Substances:
Year: 2016 PMID: 27358012 PMCID: PMC7166484 DOI: 10.1002/jmv.24619
Source DB: PubMed Journal: J Med Virol ISSN: 0146-6615 Impact factor: 2.327
Demographic and Clinical Characteristics of Patients Infected With Respiratory Syncytial Virus
| RSV‐A | RSV‐B | |||
|---|---|---|---|---|
| Characteristic | ON1 (N = 13) | NA1 (N = 11) | BA9 (N = 39) | GB2 |
| Demographics | ||||
| Age, median (range), months | 14 (2–36) | 10 (1–72) | 9 (1–52) | 8 |
| Age band, no. (%) | ||||
| 0–6 months | 3 (23.1) | 9 (81.8) | 22 (55.0) | 0 |
| 6–12 months | 6 (46.2) | 1 (9.1) | 7 (18.0) | 1 (100) |
| 12–24 months | 2 (15.4) | 0 | 8 (20.0) | 0 |
| >24 months | 2 (15.4) | 1 (9.1) | 2 (5.0) | 0 |
| Male, no. (%) | 12 (92.3) | 8 (72.7) | 28 (70) | 1 (100) |
| Symptoms | ||||
| Fever, any, no. (%) | 8 (61.5) | 4 (36.4) | 18 (45) | 1 (100) |
| Maximal temperature | ||||
| Subgroup, no. (%) | ||||
| 37.3–38.0°C | 0 | 1 (25) | 3 (16.7) | 0 |
| 38.1–39.0°C | 4 (50) | 3 (75) | 9 (50) | 1 (100) |
| >39.0°C | 4 (50) | 0 | 6 (33.3) | 0 |
| Cough, no. (%) | 13 (100) | 11 (100) | 40 (100) | 1 (100) |
| Wheezing, no. (%) | 12 (92.3) | 8 (72.7) | 29 (72.5) | 1 (100) |
| Sputum production, no. (%) | 12 (92.3) | 11 (100) | 38 (95) | 1 (100) |
| Shortness of breath, no. (%) | 3 (23.1) | 2 (18.2) | 8 (20) | 0 |
| Allergic history, no. (%) | 3 (23.1) | 3 (27.3) | 19 (47.5) | 0 |
| Clinical diagnosis, no. (%) | ||||
| URTI | 0 | 1 (9.1) | 0 | 0 |
| LRTI | 13 (100) | 10 (90.9) | 40 (100) | 1 (100) |
| Mean (±SD) disease course disease, days | 14 ± 6 | 11 ± 2 | 16 ± 12 | 12 |
RSV, respiratory syncytial virus; URTI, upper respiratory tract infection; LRTI, lower respiratory tract infection; SD, standard deviation.
Days from symptom onset to recovery was calculated as course of disease.
Co‐Infection in RSV‐Infected Patients
| Co‐infection type | No. cases (%) |
|---|---|
| Viral | |
| Parainfluenza 1 virus | 1 (1.6) |
| Human coronavirus | 7 (10.9) |
| Human bocavirus | 1 (1.6) |
| Human metapneumovirus | 1 (1.6) |
| Bacterial | |
|
| 6 (9.4) |
|
| 2 (3.1) |
|
| 2 (3.1) |
|
| 1 (1.6) |
|
| 1 (1.6) |
|
| 1 (1.6) |
|
| 1 (1.6) |
| Mycoplasma | 3 (4.7) |
RSV, respiratory syncytial virus.
Two results were based on blood culture, and four based on sputum culture.
b,d,gThe results were based on sputum culture.
One result based on blood culture, one based on sputum culture.
e,fThe result were based on blood culture.
Figure 1Phylogenetic tree of RSV‐A and RSV‐B isolates and reference sequences of identified genotypes. Phylogenetic trees for RSV‐A and RSV‐B isolates were constructed with maximum‐likelihood methods using MEGA 5.1 software. Hunan/China RSV strains are indicated by “HN” followed by their strain identification number. Reference strains representing known genotypes were retrieved from GenBank and indicated by solid triangles followed by their accession number. The genotype assignment is shown on the right by brackets. Tree topology was supported with 1,000 bootstrap replicates. Bootstrap values greater than 50 are shown at branch nodes.
The Predominant Genotype of Human RSV in Children From Four Cities in China in the Most Recent 8 Years
| Epidemic season | Beijing | Chongqing | Suzhou and Shanghai | Lanzhou | Chenzhou (South China, this study) |
|---|---|---|---|---|---|
| 2007/2008 | RSV‐A/NA1 | RSV‐A/GA2 | RSV‐A | RSV‐A/GA2 | ND |
| 2008/2009 | RSV‐B/BA9 | RSV‐B/BA | RSV‐B | RSV‐B/BA | ND |
| 2009/2010 | RSV‐B/BA9 | RSV‐B/BA | RSV‐B/BA | ND | ND |
| 2010/2011 | RSV‐A/NA1 | RSV‐A/GA2 | RSV‐A/NA1 | ND | ND |
| 2011/2012 | RSV‐A/NA1 | RSV‐A/NA1 | RSV‐A/NA1 | ND | ND |
| 2012/2013 | RSV‐B/BA9 | RSV‐B/BA | RSV‐B/BA | ND | ND |
| 2013/2014 | RSV‐A/ON1 | ND | ND | ND | RSV‐B/BA9 |
RSV, respiratory syncytial virus; ND, not determined.
The specific RSV‐B or RSV A subtypes were not identified.
Cui et al. [2015, 2013].
Zhang et al. [2010b], Qin et al. [2013], and Ren et al. [2014].
Zhang et al. [2013] and Liu et al. [2014].
Zhang et al. [2010a].
Figure 2Alignment of deduced amino acid sequences of RSV‐A strains. Amino acid sequence alignment of the second variable region of the Hunan RSV‐A strains with the A2 prototype strain (GenBank accession number M11486), ON1 strains (GenBank accession numbers JN257694 and KC559442), and the NA1 strain (GenBank accession number JN257701). Identical residues are indicated by dots, stop codons are indicated by asterisks, and N‐linked glycosylation sites (NXT, where X is not a proline) are indicated by light gray. For the ON1 strain, the duplicated regions are framed by a rectangle. Genotype names are indicated to the right of the brackets.
Figure 3Alignment of deduced amino acid sequences of RSV‐B strains. Amino acid sequence alignment of the second variable region of the Hunan RSV‐B strains with the CH10B (GB1) (GenBank accession number AF065250) and BA9 strains (GenBank accession number KC476984). Identical residues are indicated by dots, stop codons are indicated by asterisks, and N‐linked glycosylation sites (NXT, where X is not a proline) are indicated by light gray. The duplicated regions are framed by a rectangle. Genotype names are indicated to the right of the brackets.