Literature DB >> 27354192

A Computational Framework for Realistic Retina Modeling.

Pablo Martínez-Cañada1, Christian Morillas1, Begoña Pino1, Eduardo Ros1, Francisco Pelayo1.   

Abstract

Computational simulations of the retina have led to valuable insights about the biophysics of its neuronal activity and processing principles. A great number of retina models have been proposed to reproduce the behavioral diversity of the different visual processing pathways. While many of these models share common computational stages, previous efforts have been more focused on fitting specific retina functions rather than generalizing them beyond a particular model. Here, we define a set of computational retinal microcircuits that can be used as basic building blocks for the modeling of different retina mechanisms. To validate the hypothesis that similar processing structures may be repeatedly found in different retina functions, we implemented a series of retina models simply by combining these computational retinal microcircuits. Accuracy of the retina models for capturing neural behavior was assessed by fitting published electrophysiological recordings that characterize some of the best-known phenomena observed in the retina: adaptation to the mean light intensity and temporal contrast, and differential motion sensitivity. The retinal microcircuits are part of a new software platform for efficient computational retina modeling from single-cell to large-scale levels. It includes an interface with spiking neural networks that allows simulation of the spiking response of ganglion cells and integration with models of higher visual areas.

Keywords:  Computational retina modeling; adaptation to the mean light intensity; contrast adaptation; large-scale retina model; low-pass temporal filter; object motion sensitive cells; retina simulator; short-term plasticity; single-cell retina model; single-compartment model; space-variant Gaussian filter; spiking neural networks; static nonlinearity; visual adaptation

Mesh:

Year:  2016        PMID: 27354192     DOI: 10.1142/S0129065716500301

Source DB:  PubMed          Journal:  Int J Neural Syst        ISSN: 0129-0657            Impact factor:   5.866


  9 in total

1.  Directional Preference in Avian Midbrain Saliency Computing Nucleus Reflects a Well-Designed Receptive Field Structure.

Authors:  Jiangtao Wang; Longlong Qian; Songwei Wang; Li Shi; Zhizhong Wang
Journal:  Animals (Basel)       Date:  2022-04-28       Impact factor: 3.231

2.  Connecting Artificial Brains to Robots in a Comprehensive Simulation Framework: The Neurorobotics Platform.

Authors:  Egidio Falotico; Lorenzo Vannucci; Alessandro Ambrosano; Ugo Albanese; Stefan Ulbrich; Juan Camilo Vasquez Tieck; Georg Hinkel; Jacques Kaiser; Igor Peric; Oliver Denninger; Nino Cauli; Murat Kirtay; Arne Roennau; Gudrun Klinker; Axel Von Arnim; Luc Guyot; Daniel Peppicelli; Pablo Martínez-Cañada; Eduardo Ros; Patrick Maier; Sandro Weber; Manuel Huber; David Plecher; Florian Röhrbein; Stefan Deser; Alina Roitberg; Patrick van der Smagt; Rüdiger Dillman; Paul Levi; Cecilia Laschi; Alois C Knoll; Marc-Oliver Gewaltig
Journal:  Front Neurorobot       Date:  2017-01-25       Impact factor: 2.650

3.  Convis: A Toolbox to Fit and Simulate Filter-Based Models of Early Visual Processing.

Authors:  Jacob Huth; Timothée Masquelier; Angelo Arleo
Journal:  Front Neuroinform       Date:  2018-03-07       Impact factor: 4.081

4.  Running Large-Scale Simulations on the Neurorobotics Platform to Understand Vision - The Case of Visual Crowding.

Authors:  Alban Bornet; Jacques Kaiser; Alexander Kroner; Egidio Falotico; Alessandro Ambrosano; Kepa Cantero; Michael H Herzog; Gregory Francis
Journal:  Front Neurorobot       Date:  2019-05-29       Impact factor: 2.650

5.  Metaheuristic Optimisation Algorithms for Tuning a Bioinspired Retinal Model.

Authors:  Rubén Crespo-Cano; Sergio Cuenca-Asensi; Eduardo Fernández; Antonio Martínez-Álvarez
Journal:  Sensors (Basel)       Date:  2019-11-06       Impact factor: 3.576

6.  Realistic retinal modeling unravels the differential role of excitation and inhibition to starburst amacrine cells in direction selectivity.

Authors:  Elishai Ezra-Tsur; Oren Amsalem; Lea Ankri; Pritish Patil; Idan Segev; Michal Rivlin-Etzion
Journal:  PLoS Comput Biol       Date:  2021-12-30       Impact factor: 4.475

7.  Biophysical network modeling of the dLGN circuit: Effects of cortical feedback on spatial response properties of relay cells.

Authors:  Pablo Martínez-Cañada; Milad Hobbi Mobarhan; Geir Halnes; Marianne Fyhn; Christian Morillas; Francisco Pelayo; Gaute T Einevoll
Journal:  PLoS Comput Biol       Date:  2018-01-29       Impact factor: 4.475

8.  Firing-rate based network modeling of the dLGN circuit: Effects of cortical feedback on spatiotemporal response properties of relay cells.

Authors:  Milad Hobbi Mobarhan; Geir Halnes; Pablo Martínez-Cañada; Torkel Hafting; Marianne Fyhn; Gaute T Einevoll
Journal:  PLoS Comput Biol       Date:  2018-05-17       Impact factor: 4.475

9.  Retinal Processing: Insights from Mathematical Modelling.

Authors:  Bruno Cessac
Journal:  J Imaging       Date:  2022-01-17
  9 in total

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