Literature DB >> 27352968

Loss of function of the retinoid-related nuclear receptor (RORB) gene and epilepsy.

Gabrielle Rudolf1,2,3, Gaetan Lesca4,5,6, Mana M Mehrjouy7, Audrey Labalme4, Manal Salmi8,9,10, Iben Bache7,11, Nadine Bruneau8,9,10, Manuela Pendziwiat12, Joel Fluss13, Julitta de Bellescize14, Julia Scholly3, Rikke S Møller15,16, Dana Craiu17, Niels Tommerup7, Maria Paola Valenti-Hirsch3, Caroline Schluth-Bolard4,5,6, Frédérique Sloan-Béna18, Katherine L Helbig19, Sarah Weckhuysen20,21,22, Patrick Edery4,5,6, Safia Coulbaut23, Mohamed Abbas23, Ingrid E Scheffer24, Sha Tang19, Candace T Myers25, Hannah Stamberger20,21,22, Gemma L Carvill25, Deepali N Shinde19, Heather C Mefford25, Elena Neagu26, Robert Huether27, Hsiao-Mei Lu27, Alice Dica17, Julie S Cohen28, Catrinel Iliescu17, Cristina Pomeran17, James Rubenstein28,29, Ingo Helbig12,30, Damien Sanlaville4,5,6, Edouard Hirsch1,2,3, Pierre Szepetowski8,9,10.   

Abstract

Genetic generalized epilepsy (GGE), formerly known as idiopathic generalized epilepsy, is the most common form of epilepsy and is thought to have predominant genetic etiology. GGE are clinically characterized by absence, myoclonic, or generalized tonic-clonic seizures with electroencephalographic pattern of bilateral, synchronous, and symmetrical spike-and-wave discharges. Despite their strong heritability, the genetic basis of generalized epilepsies remains largely elusive. Nevertheless, recent advances in genetic technology have led to the identification of numerous genes and genomic defects in various types of epilepsies in the past few years. In the present study, we performed whole-exome sequencing in a family with GGE consistent with the diagnosis of eyelid myoclonia with absences. We found a nonsense variant (c.196C>T/p.(Arg66*)) in RORB, which encodes the beta retinoid-related orphan nuclear receptor (RORβ), in four affected family members. In addition, two de novo variants (c.218T>C/p.(Leu73Pro); c.1249_1251delACG/p.(Thr417del)) were identified in sporadic patients by trio-based exome sequencing. We also found two de novo deletions in patients with behavioral and cognitive impairment and epilepsy: a 52-kb microdeletion involving exons 5-10 of RORB and a larger 9q21-microdeletion. Furthermore, we identified a patient with intellectual disability and a balanced translocation where one breakpoint truncates RORB and refined the phenotype of a recently reported patient with RORB deletion. Our data support the role of RORB gene variants/CNVs in neurodevelopmental disorders including epilepsy, and especially in generalized epilepsies with predominant absence seizures.

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Year:  2016        PMID: 27352968      PMCID: PMC5117930          DOI: 10.1038/ejhg.2016.80

Source DB:  PubMed          Journal:  Eur J Hum Genet        ISSN: 1018-4813            Impact factor:   4.246


  30 in total

1.  High-resolution mapping and analysis of copy number variations in the human genome: a data resource for clinical and research applications.

Authors:  Tamim H Shaikh; Xiaowu Gai; Juan C Perin; Joseph T Glessner; Hongbo Xie; Kevin Murphy; Ryan O'Hara; Tracy Casalunovo; Laura K Conlin; Monica D'Arcy; Edward C Frackelton; Elizabeth A Geiger; Chad Haldeman-Englert; Marcin Imielinski; Cecilia E Kim; Livija Medne; Kiran Annaiah; Jonathan P Bradfield; Elvira Dabaghyan; Andrew Eckert; Chioma C Onyiah; Svetlana Ostapenko; F George Otieno; Erin Santa; Julie L Shaner; Robert Skraban; Ryan M Smith; Josephine Elia; Elizabeth Goldmuntz; Nancy B Spinner; Elaine H Zackai; Rosetta M Chiavacci; Robert Grundmeier; Eric F Rappaport; Struan F A Grant; Peter S White; Hakon Hakonarson
Journal:  Genome Res       Date:  2009-07-10       Impact factor: 9.043

2.  A novel microdeletion syndrome at 9q21.13 characterised by mental retardation, speech delay, epilepsy and characteristic facial features.

Authors:  Elise Boudry-Labis; Bénédicte Demeer; Cédric Le Caignec; Bertrand Isidor; Michèle Mathieu-Dramard; Ghislaine Plessis; Alice M George; Juliet Taylor; Salim Aftimos; Adelheid Wiemer-Kruel; Jürgen Kohlhase; Göran Annerén; Helen Firth; Ingrid Simonic; Joris Vermeesch; Ann-Charlotte Thuresson; Henri Copin; Donald R Love; Joris Andrieux
Journal:  Eur J Med Genet       Date:  2012-12-29       Impact factor: 2.708

3.  Electroclinical features of absence seizures in childhood absence epilepsy.

Authors:  L G Sadleir; K Farrell; S Smith; M B Connolly; I E Scheffer
Journal:  Neurology       Date:  2006-08-08       Impact factor: 9.910

4.  Rare copy number variants are an important cause of epileptic encephalopathies.

Authors:  Heather C Mefford; Simone C Yendle; Cynthia Hsu; Joseph Cook; Eileen Geraghty; Jacinta M McMahon; Orvar Eeg-Olofsson; Lynette G Sadleir; Deepak Gill; Bruria Ben-Zeev; Tally Lerman-Sagie; Mark Mackay; Jeremy L Freeman; Eva Andermann; James T Pelakanos; Ian Andrews; Geoffrey Wallace; Evan E Eichler; Samuel F Berkovic; Ingrid E Scheffer
Journal:  Ann Neurol       Date:  2011-12       Impact factor: 10.422

Review 5.  A polygenic heterogeneity model for common epilepsies with complex genetics.

Authors:  L M Dibbens; S E Heron; J C Mulley
Journal:  Genes Brain Behav       Date:  2007-06-07       Impact factor: 3.449

6.  Multiplex targeted sequencing identifies recurrently mutated genes in autism spectrum disorders.

Authors:  Brian J O'Roak; Laura Vives; Wenqing Fu; Jarrett D Egertson; Ian B Stanaway; Ian G Phelps; Gemma Carvill; Akash Kumar; Choli Lee; Katy Ankenman; Jeff Munson; Joseph B Hiatt; Emily H Turner; Roie Levy; Diana R O'Day; Niklas Krumm; Bradley P Coe; Beth K Martin; Elhanan Borenstein; Deborah A Nickerson; Heather C Mefford; Dan Doherty; Joshua M Akey; Raphael Bernier; Evan E Eichler; Jay Shendure
Journal:  Science       Date:  2012-11-15       Impact factor: 47.728

7.  An isoform of retinoid-related orphan receptor β directs differentiation of retinal amacrine and horizontal interneurons.

Authors:  Hong Liu; Soo-Young Kim; Yulong Fu; Xuefeng Wu; Lily Ng; Anand Swaroop; Douglas Forrest
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

8.  Factors influencing success of clinical genome sequencing across a broad spectrum of disorders.

Authors:  Jenny C Taylor; Hilary C Martin; Stefano Lise; John Broxholme; Jean-Baptiste Cazier; Andy Rimmer; Alexander Kanapin; Gerton Lunter; Simon Fiddy; Chris Allan; A Radu Aricescu; Moustafa Attar; Christian Babbs; Jennifer Becq; David Beeson; Celeste Bento; Patricia Bignell; Edward Blair; Veronica J Buckle; Katherine Bull; Ondrej Cais; Holger Cario; Helen Chapel; Richard R Copley; Richard Cornall; Jude Craft; Karin Dahan; Emma E Davenport; Calliope Dendrou; Olivier Devuyst; Aimée L Fenwick; Jonathan Flint; Lars Fugger; Rodney D Gilbert; Anne Goriely; Angie Green; Ingo H Greger; Russell Grocock; Anja V Gruszczyk; Robert Hastings; Edouard Hatton; Doug Higgs; Adrian Hill; Chris Holmes; Malcolm Howard; Linda Hughes; Peter Humburg; David Johnson; Fredrik Karpe; Zoya Kingsbury; Usha Kini; Julian C Knight; Jonathan Krohn; Sarah Lamble; Craig Langman; Lorne Lonie; Joshua Luck; Davis McCarthy; Simon J McGowan; Mary Frances McMullin; Kerry A Miller; Lisa Murray; Andrea H Németh; M Andrew Nesbit; David Nutt; Elizabeth Ormondroyd; Annette Bang Oturai; Alistair Pagnamenta; Smita Y Patel; Melanie Percy; Nayia Petousi; Paolo Piazza; Sian E Piret; Guadalupe Polanco-Echeverry; Niko Popitsch; Fiona Powrie; Chris Pugh; Lynn Quek; Peter A Robbins; Kathryn Robson; Alexandra Russo; Natasha Sahgal; Pauline A van Schouwenburg; Anna Schuh; Earl Silverman; Alison Simmons; Per Soelberg Sørensen; Elizabeth Sweeney; John Taylor; Rajesh V Thakker; Ian Tomlinson; Amy Trebes; Stephen Rf Twigg; Holm H Uhlig; Paresh Vyas; Tim Vyse; Steven A Wall; Hugh Watkins; Michael P Whyte; Lorna Witty; Ben Wright; Chris Yau; David Buck; Sean Humphray; Peter J Ratcliffe; John I Bell; Andrew Om Wilkie; David Bentley; Peter Donnelly; Gilean McVean
Journal:  Nat Genet       Date:  2015-05-18       Impact factor: 38.330

9.  Solution hybrid selection with ultra-long oligonucleotides for massively parallel targeted sequencing.

Authors:  Andreas Gnirke; Alexandre Melnikov; Jared Maguire; Peter Rogov; Emily M LeProust; William Brockman; Timothy Fennell; Georgia Giannoukos; Sheila Fisher; Carsten Russ; Stacey Gabriel; David B Jaffe; Eric S Lander; Chad Nusbaum
Journal:  Nat Biotechnol       Date:  2009-02-01       Impact factor: 54.908

10.  Burden analysis of rare microdeletions suggests a strong impact of neurodevelopmental genes in genetic generalised epilepsies.

Authors:  Dennis Lal; Ann-Kathrin Ruppert; Holger Trucks; Herbert Schulz; Carolien G de Kovel; Dorothée Kasteleijn-Nolst Trenité; Anja C M Sonsma; Bobby P Koeleman; Dick Lindhout; Yvonne G Weber; Holger Lerche; Claudia Kapser; Christoph J Schankin; Wolfram S Kunz; Rainer Surges; Christian E Elger; Verena Gaus; Bettina Schmitz; Ingo Helbig; Hiltrud Muhle; Ulrich Stephani; Karl M Klein; Felix Rosenow; Bernd A Neubauer; Eva M Reinthaler; Fritz Zimprich; Martha Feucht; Rikke S Møller; Helle Hjalgrim; Peter De Jonghe; Arvid Suls; Wolfgang Lieb; Andre Franke; Konstantin Strauch; Christian Gieger; Claudia Schurmann; Ulf Schminke; Peter Nürnberg; Thomas Sander
Journal:  PLoS Genet       Date:  2015-05-07       Impact factor: 5.917

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  13 in total

1.  Dual Molecular Effects of Dominant RORA Mutations Cause Two Variants of Syndromic Intellectual Disability with Either Autism or Cerebellar Ataxia.

Authors:  Claire Guissart; Xenia Latypova; Paul Rollier; Tahir N Khan; Hannah Stamberger; Kirsty McWalter; Megan T Cho; Susanne Kjaergaard; Sarah Weckhuysen; Gaetan Lesca; Thomas Besnard; Katrin Õunap; Lynn Schema; Andreas G Chiocchetti; Marie McDonald; Julitta de Bellescize; Marie Vincent; Hilde Van Esch; Shannon Sattler; Irman Forghani; Isabelle Thiffault; Christine M Freitag; Deborah Sara Barbouth; Maxime Cadieux-Dion; Rebecca Willaert; Maria J Guillen Sacoto; Nicole P Safina; Christèle Dubourg; Lauren Grote; Wilfrid Carré; Carol Saunders; Sander Pajusalu; Emily Farrow; Anne Boland; Danielle Hays Karlowicz; Jean-François Deleuze; Monica H Wojcik; Rena Pressman; Bertrand Isidor; Annick Vogels; Wim Van Paesschen; Lihadh Al-Gazali; Aisha Mohamed Al Shamsi; Mireille Claustres; Aurora Pujol; Stephan J Sanders; François Rivier; Nicolas Leboucq; Benjamin Cogné; Souphatta Sasorith; Damien Sanlaville; Kyle Retterer; Sylvie Odent; Nicholas Katsanis; Stéphane Bézieau; Michel Koenig; Erica E Davis; Laurent Pasquier; Sébastien Küry
Journal:  Am J Hum Genet       Date:  2018-04-12       Impact factor: 11.025

2.  Inherited RORB pathogenic variants: Overlap of photosensitive genetic generalized and occipital lobe epilepsy.

Authors:  Lynette G Sadleir; Guillem de Valles-Ibáñez; Chontelle King; Matthew Coleman; Stuart Mossman; Sarah Paterson; John Nguyen; Samuel F Berkovic; Saul Mullen; Melanie Bahlo; Michael S Hildebrand; Heather C Mefford; Ingrid E Scheffer
Journal:  Epilepsia       Date:  2020-03-12       Impact factor: 5.864

3.  Rorβ regulates selective axon-target innervation in the mammalian midbrain.

Authors:  Haewon Byun; Hae-Lim Lee; Hong Liu; Douglas Forrest; Andrii Rudenko; In-Jung Kim
Journal:  Development       Date:  2019-07-22       Impact factor: 6.868

4.  Identification of potent RORβ modulators: Scaffold variation.

Authors:  Christelle Doebelin; Rémi Patouret; Ruben D Garcia-Ordonez; Mi Ra Chang; Venkatasubramanian Dharmarajan; Scott Novick; Anthony Ciesla; Sean Campbell; Laura A Solt; Patrick R Griffin; Theodore M Kamenecka
Journal:  Bioorg Med Chem Lett       Date:  2018-08-16       Impact factor: 2.823

5.  Layer-specific chromatin accessibility landscapes reveal regulatory networks in adult mouse visual cortex.

Authors:  Lucas T Gray; Zizhen Yao; Thuc Nghi Nguyen; Tae Kyung Kim; Hongkui Zeng; Bosiljka Tasic
Journal:  Elife       Date:  2017-01-23       Impact factor: 8.140

6.  Diagnostic implications of genetic copy number variation in epilepsy plus.

Authors:  Antonietta Coppola; Elena Cellini; Hannah Stamberger; Elmo Saarentaus; Valentina Cetica; Dennis Lal; Tania Djémié; Magdalena Bartnik-Glaska; Berten Ceulemans; J Helen Cross; Tine Deconinck; Salvatore De Masi; Thomas Dorn; Renzo Guerrini; Dorotha Hoffman-Zacharska; Frank Kooy; Lieven Lagae; Nicholas Lench; Johannes R Lemke; Ersilia Lucenteforte; Francesca Madia; Heather C Mefford; Deborah Morrogh; Peter Nuernberg; Aarno Palotie; An-Sofie Schoonjans; Pasquale Striano; Elzbieta Szczepanik; Anna Tostevin; Joris R Vermeesch; Hilde Van Esch; Wim Van Paesschen; Jonathan J Waters; Sarah Weckhuysen; Federico Zara; Peter De Jonghe; Sanjay M Sisodiya; Carla Marini
Journal:  Epilepsia       Date:  2019-03-13       Impact factor: 5.864

Review 7.  ROR: Nuclear Receptor for Melatonin or Not?

Authors:  Haozhen Ma; Jun Kang; Wenguo Fan; Hongwen He; Fang Huang
Journal:  Molecules       Date:  2021-05-04       Impact factor: 4.411

Review 8.  Candidate Genes for Eyelid Myoclonia with Absences, Review of the Literature.

Authors:  Sonia Mayo; Irene Gómez-Manjón; Fco Javier Fernández-Martínez; Ana Camacho; Francisco Martínez; Julián Benito-León
Journal:  Int J Mol Sci       Date:  2021-05-25       Impact factor: 5.923

9.  Extensive transcriptional and chromatin changes underlie astrocyte maturation in vivo and in culture.

Authors:  Michael Lattke; Robert Goldstone; James K Ellis; Stefan Boeing; Jerónimo Jurado-Arjona; Nicolás Marichal; James I MacRae; Benedikt Berninger; Francois Guillemot
Journal:  Nat Commun       Date:  2021-07-15       Impact factor: 14.919

Review 10.  Recent advances in epilepsy genomics and genetic testing.

Authors:  Malavika Hebbar; Heather C Mefford
Journal:  F1000Res       Date:  2020-03-12
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