Literature DB >> 27348298

Population genomics studies identify signatures of global dispersal and drug resistance in Plasmodium vivax.

Daniel N Hupalo1, Zunping Luo1, Alexandre Melnikov2, Patrick L Sutton1, Peter Rogov2, Ananias Escalante3, Andrés F Vallejo4, Sócrates Herrera4, Myriam Arévalo-Herrera4,5, Qi Fan6, Ying Wang7, Liwang Cui8, Carmen M Lucas9, Salomon Durand9, Juan F Sanchez9, G Christian Baldeviano9, Andres G Lescano9, Moses Laman10, Celine Barnadas11,12, Alyssa Barry13,14, Ivo Mueller13,14,15, James W Kazura16, Alex Eapen17, Deena Kanagaraj17, Neena Valecha18, Marcelo U Ferreira19, Wanlapa Roobsoong20, Wang Nguitragool21, Jetsumon Sattabonkot20, Dionicia Gamboa22,23, Margaret Kosek24, Joseph M Vinetz22,23,25, Lilia González-Cerón26, Bruce W Birren2, Daniel E Neafsey2, Jane M Carlton1.   

Abstract

Plasmodium vivax is a major public health burden, responsible for the majority of malaria infections outside Africa. We explored the impact of demographic history and selective pressures on the P. vivax genome by sequencing 182 clinical isolates sampled from 11 countries across the globe, using hybrid selection to overcome human DNA contamination. We confirmed previous reports of high genomic diversity in P. vivax relative to the more virulent Plasmodium falciparum species; regional populations of P. vivax exhibited greater diversity than the global P. falciparum population, indicating a large and/or stable population. Signals of natural selection suggest that P. vivax is evolving in response to antimalarial drugs and is adapting to regional differences in the human host and the mosquito vector. These findings underline the variable epidemiology of this parasite species and highlight the breadth of approaches that may be required to eliminate P. vivax globally.

Entities:  

Mesh:

Substances:

Year:  2016        PMID: 27348298      PMCID: PMC5347536          DOI: 10.1038/ng.3588

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  49 in total

1.  A molecular marker of artemisinin-resistant Plasmodium falciparum malaria.

Authors:  Frédéric Ariey; Benoit Witkowski; Chanaki Amaratunga; Johann Beghain; Anne-Claire Langlois; Nimol Khim; Saorin Kim; Valentine Duru; Christiane Bouchier; Laurence Ma; Pharath Lim; Rithea Leang; Socheat Duong; Sokunthea Sreng; Seila Suon; Char Meng Chuor; Denis Mey Bout; Sandie Ménard; William O Rogers; Blaise Genton; Thierry Fandeur; Olivo Miotto; Pascal Ringwald; Jacques Le Bras; Antoine Berry; Jean-Christophe Barale; Rick M Fairhurst; Françoise Benoit-Vical; Odile Mercereau-Puijalon; Didier Ménard
Journal:  Nature       Date:  2013-12-18       Impact factor: 49.962

2.  Plasmodium vivax clinical malaria is commonly observed in Duffy-negative Malagasy people.

Authors:  Didier Ménard; Céline Barnadas; Christiane Bouchier; Cara Henry-Halldin; Laurie R Gray; Arsène Ratsimbasoa; Vincent Thonier; Jean-François Carod; Olivier Domarle; Yves Colin; Olivier Bertrand; Julien Picot; Christopher L King; Brian T Grimberg; Odile Mercereau-Puijalon; Peter A Zimmerman
Journal:  Proc Natl Acad Sci U S A       Date:  2010-03-15       Impact factor: 11.205

3.  Evidence of purifying selection on merozoite surface protein 8 (MSP8) and 10 (MSP10) in Plasmodium spp.

Authors:  M Andreína Pacheco; Alamelu P Elango; Abir A Rahman; David Fisher; William E Collins; John W Barnwell; Ananias A Escalante
Journal:  Infect Genet Evol       Date:  2012-03-03       Impact factor: 3.342

4.  Adaptive protein evolution in Drosophila.

Authors:  Nick G C Smith; Adam Eyre-Walker
Journal:  Nature       Date:  2002-02-28       Impact factor: 49.962

5.  Adaptive protein evolution at the Adh locus in Drosophila.

Authors:  J H McDonald; M Kreitman
Journal:  Nature       Date:  1991-06-20       Impact factor: 49.962

6.  A long neglected world malaria map: Plasmodium vivax endemicity in 2010.

Authors:  Peter W Gething; Iqbal R F Elyazar; Catherine L Moyes; David L Smith; Katherine E Battle; Carlos A Guerra; Anand P Patil; Andrew J Tatem; Rosalind E Howes; Monica F Myers; Dylan B George; Peter Horby; Heiman F L Wertheim; Ric N Price; Ivo Müeller; J Kevin Baird; Simon I Hay
Journal:  PLoS Negl Trop Dis       Date:  2012-09-06

7.  Automated reconstruction of whole-genome phylogenies from short-sequence reads.

Authors:  Frederic Bertels; Olin K Silander; Mikhail Pachkov; Paul B Rainey; Erik van Nimwegen
Journal:  Mol Biol Evol       Date:  2014-03-05       Impact factor: 16.240

8.  The evolutionary history of Plasmodium vivax as inferred from mitochondrial genomes: parasite genetic diversity in the Americas.

Authors:  Jesse E Taylor; M Andreína Pacheco; David J Bacon; Mohammad A Beg; Ricardo Luiz Machado; Rick M Fairhurst; Socrates Herrera; Jung-Yeon Kim; Didier Menard; Marinete Marins Póvoa; Leopoldo Villegas; Georges Snounou; Liwang Cui; Fadile Yildiz Zeyrek; Ananias A Escalante
Journal:  Mol Biol Evol       Date:  2013-06-02       Impact factor: 16.240

9.  Whole genome sequencing of field isolates reveals a common duplication of the Duffy binding protein gene in Malagasy Plasmodium vivax strains.

Authors:  Didier Menard; Ernest R Chan; Christophe Benedet; Arsène Ratsimbasoa; Saorin Kim; Pheaktra Chim; Catherine Do; Benoit Witkowski; Remy Durand; Marc Thellier; Carlo Severini; Eric Legrand; Lise Musset; Bakri Y M Nour; Odile Mercereau-Puijalon; David Serre; Peter A Zimmerman
Journal:  PLoS Negl Trop Dis       Date:  2013-11-21

10.  African origin of the malaria parasite Plasmodium vivax.

Authors:  Weimin Liu; Yingying Li; Katharina S Shaw; Gerald H Learn; Lindsey J Plenderleith; Jordan A Malenke; Sesh A Sundararaman; Miguel A Ramirez; Patricia A Crystal; Andrew G Smith; Frederic Bibollet-Ruche; Ahidjo Ayouba; Sabrina Locatelli; Amandine Esteban; Fatima Mouacha; Emilande Guichet; Christelle Butel; Steve Ahuka-Mundeke; Bila-Isia Inogwabini; Jean-Bosco N Ndjango; Sheri Speede; Crickette M Sanz; David B Morgan; Mary K Gonder; Philip J Kranzusch; Peter D Walsh; Alexander V Georgiev; Martin N Muller; Alex K Piel; Fiona A Stewart; Michael L Wilson; Anne E Pusey; Liwang Cui; Zenglei Wang; Anna Färnert; Colin J Sutherland; Debbie Nolder; John A Hart; Terese B Hart; Paco Bertolani; Amethyst Gillis; Matthew LeBreton; Babila Tafon; John Kiyang; Cyrille F Djoko; Bradley S Schneider; Nathan D Wolfe; Eitel Mpoudi-Ngole; Eric Delaporte; Richard Carter; Richard L Culleton; George M Shaw; Julian C Rayner; Martine Peeters; Beatrice H Hahn; Paul M Sharp
Journal:  Nat Commun       Date:  2014       Impact factor: 14.919

View more
  94 in total

Review 1.  Ape Origins of Human Malaria.

Authors:  Paul M Sharp; Lindsey J Plenderleith; Beatrice H Hahn
Journal:  Annu Rev Microbiol       Date:  2020-09-08       Impact factor: 15.500

Review 2.  Genomics of apicomplexan parasites.

Authors:  Lakshmipuram Seshadri Swapna; John Parkinson
Journal:  Crit Rev Biochem Mol Biol       Date:  2017-02-22       Impact factor: 8.250

3.  A Feast of Malaria Parasite Genomes.

Authors:  Jane M Carlton; Steven A Sullivan
Journal:  Cell Host Microbe       Date:  2017-03-08       Impact factor: 21.023

Review 4.  Plasmodium P47: a key gene for malaria transmission by mosquito vectors.

Authors:  Alvaro Molina-Cruz; Gaspar E Canepa; Carolina Barillas-Mury
Journal:  Curr Opin Microbiol       Date:  2017-12-08       Impact factor: 7.934

Review 5.  The Biology of Plasmodium vivax.

Authors:  John H Adams; Ivo Mueller
Journal:  Cold Spring Harb Perspect Med       Date:  2017-09-01       Impact factor: 6.915

6.  Evolution and Genetic Diversity of the k13 Gene Associated with Artemisinin Delayed Parasite Clearance in Plasmodium falciparum.

Authors:  M Andreína Pacheco; Esha R Kadakia; Zainab Chaudhary; Douglas J Perkins; Julia Kelley; Shashidhar Ravishankar; Michael Cranfield; Eldin Talundzic; Venkatachalam Udhayakumar; Ananias A Escalante
Journal:  Antimicrob Agents Chemother       Date:  2019-07-25       Impact factor: 5.191

7.  Selective sweep suggests transcriptional regulation may underlie Plasmodium vivax resilience to malaria control measures in Cambodia.

Authors:  Christian M Parobek; Jessica T Lin; David L Saunders; Eric J Barnett; Chanthap Lon; Charlotte A Lanteri; Sujata Balasubramanian; Nicholas Brazeau; Derrick K DeConti; Deen L Garba; Steven R Meshnick; Michele D Spring; Char Meng Chuor; Jeffrey A Bailey; Jonathan J Juliano
Journal:  Proc Natl Acad Sci U S A       Date:  2016-11-28       Impact factor: 11.205

8.  An unsettling picture emerges from population genomic studies of Plasmodium vivax.

Authors:  Jessica C Kissinger
Journal:  Nat Genet       Date:  2016-07-27       Impact factor: 38.330

Review 9.  Malaria Epidemiology at the Clone Level.

Authors:  Cristian Koepfli; Ivo Mueller
Journal:  Trends Parasitol       Date:  2017-09-28

Review 10.  Population Genetics and Molecular Epidemiology of Eukaryotes.

Authors:  Ronald E Blanton
Journal:  Microbiol Spectr       Date:  2018-11
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.