Literature DB >> 27344648

Whole Exome Sequencing Identifies the Genetic Basis of Late-Onset Leigh Syndrome in a Patient with MRI but Little Biochemical Evidence of a Mitochondrial Disorder.

Michael Nafisinia1,2, Yiran Guo3, Xiao Dang4,5, Jiankang Li5, Yulan Chen5, Jianguo Zhang5, Nicole J Lake6,7, Wendy A Gold1,2, Lisa G Riley1,2, David R Thorburn6,7, Brendan Keating3, Xun Xu5, Hakon Hakonarson3, John Christodoulou8,9,10.   

Abstract

Leigh syndrome is a subacute necrotising encephalomyopathy proven by post-mortem analysis of brain tissue showing spongiform lesions with vacuolation of the neuropil followed by demyelination, gliosis and capillary proliferation caused by mutations in one of over 75 different genes, including nuclear- and mitochondrial-encoded genes, most of which are associated with mitochondrial respiratory chain function. In this study, we report a patient with suspected Leigh syndrome presenting with seizures, ptosis, scoliosis, dystonia, symmetrical putaminal abnormalities and a lactate peak on brain MRS, but showing normal MRC enzymology in muscle and liver, thereby complicating the diagnosis. Whole exome sequencing uncovered compound heterozygous mutations in NADH dehydrogenase (ubiquinone) flavoprotein 1 gene (NDUFV1), c.1162+4A>C (NM_007103.3), resulting in skipping of exon 8, and c.640G>A, causing the amino acid substitution p.Glu214Lys, both of which have previously been reported in a patient with complex I deficiency. Patient fibroblasts showed a significant reduction in NDUFV1 protein expression, decreased complex CI and complex IV assembly and consequential reductions in the enzymatic activities of both complexes by 38% and 67%, respectively. The pathogenic effect of these variations was further confirmed by immunoblot analysis of subunits for MRC enzyme complexes in patient muscle, liver and fibroblast where we observed 90%, 60% and 95% reduction in complex CI, respectively. Together these studies highlight the importance of a comprehensive, multipronged approach to the laboratory evaluation of patients with suspected Leigh syndrome.

Entities:  

Keywords:  Leigh syndrome; Mitochondrial respiratory chain complexes; Mutation; NDUFV1; Whole exome sequencing

Year:  2016        PMID: 27344648      PMCID: PMC5362551          DOI: 10.1007/8904_2016_541

Source DB:  PubMed          Journal:  JIMD Rep        ISSN: 2192-8304


  22 in total

1.  Biochemical analyses of the electron transport chain complexes by spectrophotometry.

Authors:  Ann E Frazier; David R Thorburn
Journal:  Methods Mol Biol       Date:  2012

Review 2.  Leigh syndrome: One disorder, more than 75 monogenic causes.

Authors:  Nicole J Lake; Alison G Compton; Shamima Rahman; David R Thorburn
Journal:  Ann Neurol       Date:  2015-12-15       Impact factor: 10.422

3.  A molecular chaperone for mitochondrial complex I assembly is mutated in a progressive encephalopathy.

Authors:  Isla Ogilvie; Nancy G Kennaway; Eric A Shoubridge
Journal:  J Clin Invest       Date:  2005-10       Impact factor: 14.808

4.  Mutant NDUFV1 subunit of mitochondrial complex I causes leukodystrophy and myoclonic epilepsy.

Authors:  M Schuelke; J Smeitink; E Mariman; J Loeffen; B Plecko; F Trijbels; S Stöckler-Ipsiroglu; L van den Heuvel
Journal:  Nat Genet       Date:  1999-03       Impact factor: 38.330

5.  Mutation in mitochondrial ribosomal protein S7 (MRPS7) causes congenital sensorineural deafness, progressive hepatic and renal failure and lactic acidemia.

Authors:  Minal J Menezes; Yiran Guo; Jianguo Zhang; Lisa G Riley; Sandra T Cooper; David R Thorburn; Jiankang Li; Daoyuan Dong; Zhijun Li; Joseph Glessner; Ryan L Davis; Carolyn M Sue; Stephen I Alexander; Susan Arbuckle; Paul Kirwan; Brendan J Keating; Xun Xu; Hakon Hakonarson; John Christodoulou
Journal:  Hum Mol Genet       Date:  2015-01-02       Impact factor: 6.150

6.  Respiratory chain enzyme analysis in muscle and liver.

Authors:  D R Thorburn; C W Chow; D M Kirby
Journal:  Mitochondrion       Date:  2004-09       Impact factor: 4.160

7.  High-throughput, pooled sequencing identifies mutations in NUBPL and FOXRED1 in human complex I deficiency.

Authors:  Sarah E Calvo; Elena J Tucker; Alison G Compton; Denise M Kirby; Gabriel Crawford; Noel P Burtt; Manuel Rivas; Candace Guiducci; Damien L Bruno; Olga A Goldberger; Michelle C Redman; Esko Wiltshire; Callum J Wilson; David Altshuler; Stacey B Gabriel; Mark J Daly; David R Thorburn; Vamsi K Mootha
Journal:  Nat Genet       Date:  2010-09-05       Impact factor: 38.330

8.  Mitochondrial abnormalities in temporal lobe of autistic brain.

Authors:  Guomei Tang; Puri Gutierrez Rios; Sheng-Han Kuo; Hasan Orhan Akman; Gorazd Rosoklija; Kurenai Tanji; Andrew Dwork; Eric A Schon; Salvatore Dimauro; James Goldman; David Sulzer
Journal:  Neurobiol Dis       Date:  2013-01-17       Impact factor: 5.996

9.  Analysis of mitochondrial subunit assembly into respiratory chain complexes using Blue Native polyacrylamide gel electrophoresis.

Authors:  Matthew McKenzie; Michael Lazarou; David R Thorburn; Michael T Ryan
Journal:  Anal Biochem       Date:  2007-02-24       Impact factor: 3.365

10.  Leigh syndrome: clinical features and biochemical and DNA abnormalities.

Authors:  S Rahman; R B Blok; H H Dahl; D M Danks; D M Kirby; C W Chow; J Christodoulou; D R Thorburn
Journal:  Ann Neurol       Date:  1996-03       Impact factor: 10.422

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  5 in total

1.  Homozygous splice-variants in human ARV1 cause GPI-anchor synthesis deficiency.

Authors:  Mariska Davids; Minal Menezes; Yiran Guo; Scott D McLean; Hakon Hakonarson; Felicity Collins; Lisa Worgan; Charles J Billington; Irina Maric; Rebecca Okashah Littlejohn; Tito Onyekweli; David R Adams; Cynthia J Tifft; William A Gahl; Lynne A Wolfe; John Christodoulou; May Christine V Malicdan
Journal:  Mol Genet Metab       Date:  2020-02-10       Impact factor: 4.797

2.  Identification and functional characterization of a novel MTFMT mutation associated with selective vulnerability of the visual pathway and a mild neurological phenotype.

Authors:  Roberta La Piana; Woranontee Weraarpachai; Luis H Ospina; Martine Tetreault; Jacek Majewski; G Bruce Pike; Jean-Claude Decarie; Donatella Tampieri; Bernard Brais; Eric A Shoubridge
Journal:  Neurogenetics       Date:  2017-01-05       Impact factor: 2.660

3.  Compound heterozygous mutations in glycyl-tRNA synthetase (GARS) cause mitochondrial respiratory chain dysfunction.

Authors:  Michael Nafisinia; Lisa G Riley; Wendy A Gold; Kaustuv Bhattacharya; Carolyn R Broderick; David R Thorburn; Cas Simons; John Christodoulou
Journal:  PLoS One       Date:  2017-06-08       Impact factor: 3.240

Review 4.  In Vivo Assessment of Mitochondrial Dysfunction in Clinical Populations Using Near-Infrared Spectroscopy.

Authors:  T Bradley Willingham; Kevin K McCully
Journal:  Front Physiol       Date:  2017-09-14       Impact factor: 4.566

5.  Leukocytes mediate disease pathogenesis in the Ndufs4(KO) mouse model of Leigh syndrome.

Authors:  Julia C Stokes; Rebecca L Bornstein; Katerina James; Kyung Yeon Park; Kira A Spencer; Katie Vo; John C Snell; Brittany M Johnson; Philip G Morgan; Margaret M Sedensky; Nathan A Baertsch; Simon C Johnson
Journal:  JCI Insight       Date:  2022-03-08
  5 in total

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