| Literature DB >> 27341797 |
Arijit Karmakar1, Subhamita Maitra1, Barnali Chakraborti1, Deepak Verma1, Swagata Sinha1, Kochupurackal P Mohanakumar2, Usha Rajamma1, Kanchan Mukhopadhyay3.
Abstract
BACKGROUND: Attention deficit hyperactivity disorder (ADHD) is characterized by symptoms of inattention, excessive motor activity and impulsivity detected mostly during childhood. These traits are known to be controlled by monoamine neurotransmitters, chiefly dopamine, serotonin and norepinephrine. Monoamine oxidase A (MAOA) and B (MAOB), two isoenzymes bound to the outer membrane of mitochondria, are involved in the degradation of monoamines and were explored for association with ADHD in different ethnic groups. In the present study, few exonic as well as intronic MAOB variants were analyzed in ADHD probands (N = 150) and ethnically matched controls (N = 150) recruited following the Diagnostic and Statistical Manual for Mental Disorders-4(th) edition (DSM-IV). Appropriate scales were used for measuring the behavioural attributes. Gene variants were analyzed by amplification of target sites followed by DNA sequencing and data obtained were analyzed by population based statistical methods.Entities:
Keywords: ADHD; Conduct problems; Indo-Caucasoid population; Linkage disequilibrium; MAOB; Multifactor dimensionality reduction; rs56220155
Mesh:
Substances:
Year: 2016 PMID: 27341797 PMCID: PMC4921030 DOI: 10.1186/s12863-016-0401-6
Source DB: PubMed Journal: BMC Genet ISSN: 1471-2156 Impact factor: 2.797
Comparative analysis on allelic and genotypic frequencies in different populations [1000 Genomes Project Phase 3 (32)]
| Variants with respective alleles | Super-populations | Populations | Allele count (frequency) | Chi-square ( | Genotype count (frequency) | Chi-square ( | |||
|---|---|---|---|---|---|---|---|---|---|
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| rs4824562 [ | AFR | ACB | 140 (0.97) | 5 (0.03) | 27.80 ( | 46 (0.94) | 3 (0.06) | 0 (0.00) | 16.30 ( |
| ASW | 93 (0.97) | 3 (0.03) | 20.20 ( | 32 (0.91) | 3 (0.09) | 0 (0.00) | 11.00 ( | ||
| ESN | 144 (0.99) | 1 (0.01) | 38.10 ( | 45 (0.98) | 1 (0.02) | 0 (0.00) | 20.30 ( | ||
| LWK | 153 (0.99) | 1 (0.01) | 40.50 ( | 54 (0.98) | 1 (0.02) | 0 (0.00) | 24.10 ( | ||
| MAG | 170 (0.99) | 1 (0.01) | 44.80 ( | 57 (0.98) | 1 (0.02) | 0 (0.00) | 25.40 ( | ||
| MSL | 127 (0.99) | 1 (0.01) | 33.70 ( | 43 (1.00) | 0 (0.00) | 0 (0.00) | 22.60 ( | ||
| YRI | 163 (0.99) | 1 (0.01) | 43.00 ( | 56 (1.00) | 0 (0.00) | 0 (0.00) | 28.50 ( | ||
| AMR | CLM | 110 (0.76) | 35 (0.24) | 0.01 (0.93) | 25 (0.49) | 22 (0.43) | 4 (0.08) | 1.00 (0.61) | |
| MXL | 79 (0.82) | 17 (0.18) | 1.69 (0.19) | 17 (0.53) | 13 (0.41) | 2 (0.06) | 0.83 (0.66) | ||
| PEL | 85 (0.66) | 44 (0.34) | 3.31 (0.07) | 16 (0.36) | 25 (0.57) | 3 (0.07) | 3.96 (0.14) | ||
| PUR | 135 (0.88) | 19 (0.12) | 8.02 ( | 35 (0.70) | 14 (0.28) | 1 (0.02) | 3.72 (0.16) | ||
| EAS | CDX | 112 (0.79) | 30 (0.21) | 0.53 (0.47) | 28 (0.57) | 19 (0.39) | 2 (0.04) | 1.75 (0.42) | |
| CHB | 134 (0.84) | 26 (0.16) | 3.54 (0.06) | 39 (0.68) | 14 (0.25) | 4 (0.07) | 1.28 (0.53) | ||
| CHS | 141 (0.89) | 17 (0.11) | 10.70 ( | 40 (0.75) | 13 (0.25) | 0 (0.00) | 7.64 ( | ||
| JPT | 130 (0.86) | 22 (0.14) | 5.21 ( | 33 (0.69) | 14 (0.29) | 1 (0.02) | 3.41 (0.18) | ||
| KHV | 128 (0.84) | 24 (0.16) | 3.85 ( | 41 (0.77) | 10 (0.19) | 2 (0.04) | 4.16 (0.13) | ||
| EUR | CEU | 125 (0.84) | 24 (0.16) | 3.51 (0.06) | 35 (0.70) | 13 (0.26) | 2 (0.04) | 2.31 (0.31) | |
| FIN | 131 (0.82) | 29 (0.18) | 2.06 (0.15) | 41 (0.67) | 18 (0.30) | 2 (0.03) | 2.70 (0.26) | ||
| GBR | 116 (0.85) | 20 (0.15) | 4.61 ( | 32 (0.71) | 12 (0.27) | 1 (0.02) | 3.41 (0.18) | ||
| IBS | 142 (0.89) | 18 (0.11) | 9.96 ( | 39 (0.74) | 13 (0.25) | 1 (0.01) | 4.51 (0.11) | ||
| TSI | 135 (0.84) | 26 (0.16) | 3.65 (0.06) | 41 (0.76) | 11 (0.20) | 2 (0.04) | 3.79 (0.15) | ||
| SAS | BEB | 98 (0.75) | 32 (0.25) | 0.00 (0.99) | 27 (0.62) | 16 (0.36) | 1 (0.02) | 2.77 (0.25) | |
| GIH | 110 (0.73) | 40 (0.27) | 0.19 (0.67) | 29 (0.62) | 13 (0.28) | 5 (0.10) | 0.22 (0.90) | ||
| ITU | 115 (0.79) | 30 (0.21) | 0.68 (0.41) | 25 (0.58) | 16 (0.37) | 2 (0.05) | 1.30 (0.52) | ||
| PJL | 116 (0.81) | 28 (0.19) | 1.20 (0.27) | 29 (0.60) | 18 (0.38) | 1 (0.02) | 3.14 (0.21) | ||
| STU | 119 (0.80) | 30 (0.20) | 0.91 (0.34) | 29 (0.62) | 14 (0.30) | 4 (0.08) | 0.32 (0.85) | ||
| IND | 132 (0.75) | 43 (0.25) | - | 14 (0.56) | 8 (0.32) | 3 (0.12) | - | ||
| rs56220155 [ | AFR | ACB | 58 (0.40) | 87 (0.60) | 0.27 (0.60) | 6 (0.12) | 30 (0.61) | 13 (0.27) | 7.77 ( |
| ASW | 37 (0.39) | 59 (0.61) | 0.05 (0.82) | 2 (0.06) | 18 (0.51) | 15 (0.43) | 3.99 (0.14) | ||
| ESN | 55 (0.38) | 90 (0.62) | 0.02 (0.89) | 8 (0.17) | 18 (0.39) | 20 (0.44) | 1.12 (0.57) | ||
| LWK | 59 (0.38) | 95 (0.62) | 0.05 (0.83) | 11 (0.20) | 23 (0.42) | 21 (0.38) | 2.27 (0.32) | ||
| MAG | 68 (0.40) | 103 (0.60) | 0.25 (0.62) | 9 (0.16) | 29 (0.50) | 20 (0.34) | 3.93 (0.14) | ||
| MSL | 61 (0.48) | 67 (0.52) | 3.36 (0.07) | 8 (0.19) | 27 (0.62) | 8 (0.19) | 10.70 ( | ||
| YRI | 69 (0.42) | 95 (0.58) | 0.86 (0.35) | 10 (0.17) | 25 (0.45) | 21 (0.38) | 2.62 (0.27) | ||
| AMR | CLM | 20 (0.14) | 125 (0.86) | 22.20 ( | 2 (0.04) | 10 (0.20) | 39 (0.76) | 4.64 (0.10) | |
| MXL | 10 (0.10) | 86 (0.90) | 22.10 ( | 1 (0.03) | 3 (0.09) | 28 (0.88) | 7.32 ( | ||
| PEL | 7 (0.05) | 122 (0.95) | 41.30 ( | 0 (0.00) | 6 (0.14) | 38 (0.86) | 10.70 ( | ||
| PUR | 53 (0.34) | 101 (0.66) | 0.27 (0.61) | 7 (0.14) | 24 (0.48) | 19 (0.38) | 2.89 (0.24) | ||
| EAS | CDX | 16 (0.11) | 126 (0.89) | 27.60 ( | 1 (0.02) | 7 (0.14) | 41 (0.84) | 8.13 ( | |
| CHB | 26 (0.16) | 134 (0.84) | 18.40 ( | 1 (0.02) | 15 (0.26) | 41 (0.72) | 6.46 ( | ||
| CHS | 23 (0.15) | 135 (0.85) | 21.80 ( | 0 (0.00) | 17 (0.32) | 36 (0.68) | 8.95 ( | ||
| JPT | 21 (0.14) | 131 (0.86) | 22.80 ( | 1 (0.02) | 10 (0.21) | 37 (0.77) | 6.06 ( | ||
| KHV | 15 (0.10) | 137 (0.90) | 32.70 ( | 1 (0.02) | 10 (0.19) | 42 (0.79) | 7.21 ( | ||
| EUR | CEU | 35 (0.23) | 114 (0.77) | 7.03 ( | 3 (0.06) | 16 (0.32) | 31 (0.62) | 1.97 (0.38) | |
| FIN | 45 (0.28) | 115 (0.72) | 3.08 (0.08) | 5 (0.08) | 26 (0.43) | 30 (0.49) | 2.18 (0.34) | ||
| GBR | 45 (0.33) | 91 (0.67) | 0.55 (0.46) | 4 (0.09) | 23 (0.51) | 18 (0.40) | 3.61 (0.16) | ||
| IBS | 49 (0.31) | 111 (0.69) | 1.58 (0.21) | 4 (0.08) | 26 (0.49) | 23 (0.43) | 3.53 (0.17) | ||
| TSI | 44 (0.27) | 117 (0.73) | 3.68 (0.06) | 6 (0.11) | 19 (0.35) | 29 (0.54) | 0.61 (0.74) | ||
| SAS | BEB | 33 (0.25) | 97 (0.75) | 4.73 ( | 1 (0.02) | 22 (0.50) | 21 (0.48) | 6.20 ( | |
| GIH | 30 (0.20) | 120 (0.80) | 11.50 ( | 3 (0.06) | 15 (0.32) | 29 (0.62) | 1.72 (0.42) | ||
| ITU | 54 (0.37) | 91 (0.63) | 0.00 (0.99) | 7 (0.16) | 17 (0.40) | 19 (0.44) | 1.05 (0.59) | ||
| PJL | 46 (0.32) | 98 (0.68) | 0.94 (0.33) | 3 (0.06) | 20 (0.42) | 25 (0.52) | 2.51 (0.29) | ||
| STU | 48 (0.32) | 101 (0.68) | 0.86 (0.35) | 1 (0.02) | 26 (0.55) | 20 (0.43) | 7.80 ( | ||
| IND | 65 (0.37) | 110 (0.63) | - | 4 (0.16) | 7 (0.28) | 14 (0.56) | - | ||
| rs2283727 [ | AFR | ACB | 132 (0.91) | 13 (0.09) | 14.20 ( | 40 (0.82) | 9 (0.18) | 0 (0.00) | 7.63 ( |
| ASW | 84 (0.88) | 12 (0.12) | 6.04 ( | 27 (0.77) | 8 (0.23) | 0 (0.00) | 4.97 (0.08) | ||
| ESN | 124 (0.86) | 21 (0.14) | 5.57 ( | 35 (0.76) | 10 (0.22) | 1 (0.02) | 3.64 (0.16) | ||
| LWK | 140 (0.91) | 14 (0.09) | 14.50 ( | 45 (0.82) | 8 (0.15) | 2 (0.03) | 4.67 (0.10) | ||
| MAG | 155 (0.91) | 16 (0.09) | 15.00 ( | 50 (0.86) | 7 (0.12) | 1 (0.02) | 7.99 ( | ||
| MSL | 112 (0.88) | 16 (0.12) | 7.44 ( | 33 (0.77) | 9 (0.21) | 1 (0.02) | 3.48 (0.18) | ||
| YRI | 143 (0.87) | 21 (0.13) | 8.32 ( | 47 (0.84) | 8 (0.14) | 1 (0.02) | 6.70 ( | ||
| AMR | CLM | 145 (1.00) | 0 (0.00) | 42.30 ( | 51 (1.00) | 0 (0.00) | 0 (0.00) | 23.50 ( | |
| MXL | 96 (1.00) | 0 (0.00) | 28.80 ( | 32 (1.00) | 0 (0.00) | 0 (0.00) | 15.50 ( | ||
| PEL | 127 (0.98) | 2 (0.02) | 32.20 ( | 42 (0.95) | 2 (0.05) | 0 (0.00) | 14.40 ( | ||
| PUR | 149 (0.97) | 5 (0.03) | 31.00 ( | 48 (0.96) | 2 (0.04) | 0 (0.00) | 16.60 ( | ||
| EAS | CDX | 130 (0.91) | 12 (0.09) | 15.00 ( | 43 (0.88) | 5 (0.10) | 1 (0.02) | 7.90 ( | |
| CHB | 141 (0.88) | 19 (0.12) | 9.64 ( | 43 (0.75) | 13 (0.23) | 1 (0.02) | 4.52 (0.10) | ||
| CHS | 138 (0.87) | 20 (0.13) | 8.34 ( | 39 (0.74) | 14 (0.26) | 0 (0.00) | 6.83 ( | ||
| JPT | 131 (0.86) | 21 (0.14) | 6.55 ( | 37 (0.77) | 10 (0.21) | 1 (0.02) | 3.99 (0.14) | ||
| KHV | 140 (0.92) | 12 (0.08) | 17.10 ( | 44 (0.83) | 9 (0.17) | 0 (0.00) | 8.56 ( | ||
| EUR | CEU | 148 (0.99) | 1 (0.01) | 40.30 ( | 49 (0.98) | 1 (0.02) | 0 (0.00) | 19.40 ( | |
| FIN | 160 (1.00) | 0 (0.00) | 46.30 ( | 61 (1.00) | 0 (0.00) | 0 (0.00) | 27.60 ( | ||
| GBR | 134 (0.99) | 2 (0.01) | 34.00 ( | 44 (0.98) | 1 (0.02) | 0 (0.00) | 17.50 ( | ||
| IBS | 160 (1.00) | 0 (0.00) | 46.30 ( | 53 (1.00) | 0 (0.00) | 0 (0.00) | 24.30 ( | ||
| TSI | 161 (1.00) | 0 (0.00) | 46.60 ( | 54 (1.00) | 0 (0.00) | 0 (0.00) | 24.70 ( | ||
| SAS | BEB | 103 (0.79) | 27 (0.21) | 0.80 (0.37) | 26 (0.59) | 18 (0.41) | 0 (0.00) | 6.02 ( | |
| GIH | 127 (0.85) | 23 (0.15) | 4.75 ( | 32 (0.68) | 12 (0.26) | 3 (0.06) | 0.82 (0.66) | ||
| ITU | 101 (0.70) | 44 (0.30) | 1.08 (0.30) | 21 (0.49) | 17 (0.40) | 5 (0.11) | 0.97 (0.62) | ||
| PJL | 109 (0.76) | 35 (0.24) | 0.03 (0.86) | 31 (0.65) | 14 (0.29) | 3 (0.06) | 0.72 (0.70) | ||
| STU | 119 (0.80) | 30 (0.20) | 1.15 (0.28) | 30 (0.64) | 17 (0.36) | 0 (0.00) | 6.01 ( | ||
| IND | 131 (0.75) | 44 (0.25) | - | 15 (0.60) | 7 (0.28) | 3 (0.12) | - | ||
| rs3027441 [ | AFR | ACB | 25 (0.17) | 120 (0.83) | 0.77 (0.38) | 1 (0.02) | 16 (0.33) | 32 (0.65) | 1.89 (0.39) |
| ASW | 18 (0.19) | 78 (0.81) | 0.22 (0.64) | 0 (0.00) | 13 (0.37) | 22 (0.63) | 3.65 (0.16) | ||
| ESN | 31 (0.21) | 114 (0.79) | 0.00 (0.96) | 3 (0.06) | 15 (0.33) | 28 (0.61) | 0.59 (0.75) | ||
| LWK | 16 (0.10) | 138 (0.90) | 7.01 ( | 2 (0.04) | 10 (0.18) | 43 (0.78) | 1.18 (0.55) | ||
| MAG | 22 (0.13) | 149 (0.87) | 4.19 ( | 1 (0.02) | 13 (0.22) | 44 (0.76) | 2.07 (0.36) | ||
| MSL | 21 (0.16) | 107 (0.84) | 1.07 (0.30) | 1 (0.02) | 12 (0.28) | 30 (0.70) | 1.25 (0.54) | ||
| YRI | 29 (0.18) | 135 (0.82) | 0.65 (0.42) | 3 (0.05) | 10 (0.18) | 43 (0.77) | 0.71 (0.70) | ||
| AMR | CLM | 12 (0.08) | 133 (0.92) | 10.10 ( | 0 (0.00) | 7 (0.14) | 44 (0.86) | 5.81 (0.06) | |
| MXL | 7 (0.07) | 89 (0.93) | 8.75 ( | 0 (0.00) | 3 (0.09) | 29 (0.91) | 5.35 (0.07) | ||
| PEL | 22 (0.17) | 107 (0.83) | 0.79 (0.37) | 2 (0.04) | 13 (0.30) | 29 (0.66) | 0.52 (0.77) | ||
| PUR | 11 (0.07) | 143 (0.93) | 12.9 ( | 0 (0.00) | 5 (0.10) | 45 (0.90) | 7.20 ( | ||
| EAS | CDX | 17 (0.12) | 125 (0.88) | 4.67 ( | 1 (0.02) | 9 (0.18) | 39 (0.80) | 2.00 (0.37) | |
| CHB | 27 (0.17) | 133 (0.83) | 0.99 (0.32) | 1 (0.02) | 17 (0.30) | 39 (0.68) | 2.06 (0.36) | ||
| CHS | 32 (0.20) | 126 (0.80) | 0.04 (0.84) | 1 (0.02) | 19 (0.36) | 33 (0.62) | 2.48 (0.29) | ||
| JPT | 37 (0.24) | 115 (0.76) | 0.48 (0.50) | 2 (0.04) | 18 (0.38) | 28 (0.58) | 1.60 (0.45) | ||
| KHV | 16 (0.10) | 136 (0.90) | 6.75 ( | 1 (0.02) | 9 (0.17) | 43 (0.81) | 2.47 (0.29) | ||
| EUR | CEU | 1 (0.01) | 148 (0.99) | 32.60 ( | 0 (0.00) | 1 (0.02) | 49 (0.98) | 14.30 ( | |
| FIN | 0 (0.00) | 160 (1.00) | 38.00 ( | 0 (0.00) | 0 (0.00) | 61 (1.00) | 21.50 ( | ||
| GBR | 2 (0.01) | 134 (0.99) | 27.00 ( | 0 (0.00) | 1 (0.02) | 44 (0.98) | 12.90 ( | ||
| IBS | 0 (0.00) | 160 (1.00) | 38.00 ( | 0 (0.00) | 0 (0.00) | 53 (1.00) | 18.90 ( | ||
| TSI | 0 (0.00) | 161 (1.00) | 38.30 ( | 0 (0.00) | 0 (0.00) | 54 (1.00) | 19.20 ( | ||
| SAS | BEB | 27 (0.21) | 103 (0.79) | 0.01 (0.94) | 0 (0.00) | 18 (0.41) | 26 (0.59) | 5.03 (0.08) | |
| GIH | 23 (0.15) | 127 (0.85) | 1.81 (0.18) | 3 (0.06) | 12 (0.26) | 32 (0.68) | 0.08 (0.96) | ||
| ITU | 44 (0.30) | 101 (0.70) | 3.55 (0.06) | 5 (0.11) | 17 (0.40) | 21 (0.49) | 2.37 (0.31) | ||
| PJL | 35 (0.24) | 109 (0.76) | 0.45 (0.50) | 3 (0.06) | 14 (0.29) | 31 (0.65) | 0.26 (0.88) | ||
| STU | 30 (0.20) | 119 (0.80) | 0.05 (0.82) | 0 (0.00) | 17 (0.36) | 30 (0.64) | 4.56 (0.10) | ||
| IND | 37 (0.21) | 138 (0.79) | - | 2 (0.08) | 6 (0.24) | 17 (0.68) | - | ||
| rs6324 [ | AFR | ACB | 141 (0.97) | 4 (0.03) | 24.00 ( | 46 (0.94) | 3 (0.06) | 0 (0.00) | 9.57 ( |
| ASW | 92 (0.96) | 4 (0.04) | 13.90 ( | 32 (0.91) | 3 (0.09) | 0 (0.00) | 6.09 ( | ||
| ESN | 135 (0.93) | 10 (0.07) | 12.80 ( | 42 (0.91) | 3 (0.07) | 1 (0.02) | 6.26 ( | ||
| LWK | 149 (0.97) | 5 (0.03) | 23.60 ( | 51 (0.93) | 3 (0.05) | 1 (0.02) | 8.24 ( | ||
| MAG | 165 (0.96) | 6 (0.04) | 24.70 ( | 54 (0.93) | 4 (0.07) | 0 (0.00) | 10.20 ( | ||
| MSL | 123 (0.96) | 5 (0.04) | 18.40 ( | 38 (0.88) | 5 (0.12) | 0 (0.00) | 5.75 (0.06) | ||
| YRI | 155 (0.95) | 9 (0.05) | 17.70 ( | 52 (0.93) | 3 (0.05) | 1 (0.02) | 8.46 ( | ||
| AMR | CLM | 134 (0.92) | 11 (0.08) | 11.40 ( | 45 (0.88) | 6 (0.12) | 0 (0.00) | 6.51 ( | |
| MXL | 89 (0.93) | 7 (0.07) | 8.75 ( | 29 (0.91) | 3 (0.09) | 0 (0.00) | 5.35 (0.07) | ||
| PEL | 108 (0.84) | 21 (0.16) | 1.14 (0.29) | 30 (0.68) | 12 (0.27) | 2 (0.05) | 0.39 (0.82) | ||
| PUR | 146 (0.95) | 8 (0.05) | 17.60 ( | 46 (0.92) | 4 (0.08) | 0 (0.00) | 8.34 ( | ||
| EAS | CDX | 125 (0.88) | 17 (0.12) | 4.67 ( | 39 (0.80) | 9 (0.18) | 1 (0.02) | 2.00 (0.37) | |
| CHB | 133 (0.83) | 27 (0.17) | 0.99 (0.32) | 39 (0.68) | 17 (0.30) | 1 (0.02) | 2.06 (0.36) | ||
| CHS | 126 (0.80) | 32 (0.20) | 0.04 (0.84) | 33 (0.62) | 19 (0.36) | 1 (0.02) | 2.48 (0.29) | ||
| JPT | 115 (0.76) | 37 (0.24) | 0.48 (0.49) | 28 (0.58) | 18 (0.38) | 2 (0.04) | 1.60 (0.45) | ||
| KHV | 136 (0.90) | 16 (0.10) | 6.75 ( | 43 (0.81) | 9 (0.17) | 1 (0.02) | 2.47 (0.29) | ||
| EUR | CEU | 148 (0.99) | 1 (0.01) | 32.60 ( | 49 (0.98) | 1 (0.02) | 0 (0.00) | 14.30 ( | |
| FIN | 160 (1.00) | 0 (0.00) | 38.00 ( | 61 (1.00) | 0 (0.00) | 0 (0.00) | 21.50 ( | ||
| GBR | 134 (0.99) | 2 (0.01) | 27.00 ( | 44 (0.98) | 1 (0.02) | 0 (0.00) | 12.90 ( | ||
| IBS | 160 (1.00) | 0 (0.00) | 38.00 ( | 53 (1.00) | 0 (0.00) | 0 (0.00) | 18.90 ( | ||
| TSI | 161 (1.00) | 0 (0.00) | 38.30 ( | 54 (1.00) | 0 (0.00) | 0 (0.00) | 19.20 ( | ||
| SAS | BEB | 103 (0.79) | 27 (0.21) | 0.01 (0.94) | 26 (0.59) | 18 (0.41) | 0 (0.00) | 5.03 (0.08) | |
| GIH | 127 (0.85) | 23 (0.15) | 1.81 (0.18) | 32 (0.68) | 12 (0.26) | 3 (0.06) | 0.08 (0.96) | ||
| ITU | 101 (0.70) | 44 (0.30) | 3.55 (0.06) | 21 (0.49) | 17 (0.40) | 5 (0.11) | 2.37 (0.31) | ||
| PJL | 109 (0.76) | 35 (0.24) | 0.45 (0.50) | 31 (0.65) | 14 (0.29) | 3 (0.06) | 0.26 (0.88) | ||
| STU | 119 (0.80) | 30 (0.20) | 0.05 (0.82) | 30 (0.64) | 17 (0.36) | 0 (0.00) | 4.56 (0.10) | ||
| IND | 138 (0.79) | 37 (0.21) | - | 17 (0.68) | 6 (0.24) | 2 (0.08) | - | ||
| rs3027440 [ | AFR | ACB | 141 (0.97) | 4 (0.03) | 34.40 ( | 46 (0.94) | 3 (0.06) | 0 (0.00) | 7.79 ( |
| ASW | 92 (0.96) | 4 (0.04) | 20.90 ( | 32 (0.91) | 3 (0.09) | 0 (0.00) | 4.89 (0.09) | ||
| ESN | 135 (0.93) | 10 (0.07) | 21.60 ( | 42 (0.91) | 3 (0.07) | 1 (0.02) | 4.63 (0.10) | ||
| LWK | 149 (0.97) | 5 (0.03) | 34.30 ( | 51 (0.93) | 3 (0.05) | 1 (0.02) | 6.24 ( | ||
| MAG | 165 (0.97) | 6 (0.03) | 36.30 ( | 54 (0.93) | 4 (0.07) | 0 (0.00) | 8.30 ( | ||
| MSL | 123 (0.96) | 5 (0.04) | 27.40 ( | 38 (0.88) | 5 (0.12) | 0 (0.00) | 4.71 (0.10) | ||
| YRI | 155 (0.95) | 9 (0.05) | 28.00 ( | 52 (0.93) | 3 (0.05) | 1 (0.02) | 6.42 ( | ||
| AMR | CLM | 134 (0.92) | 11 (0.08) | 19.80 ( | 45 (0.88) | 6 (0.12) | 0 (0.00) | 5.40 (0.07) | |
| MXL | 89 (0.93) | 7 (0.07) | 14.90 ( | 29 (0.91) | 3 (0.09) | 0 (0.00) | 4.28 (0.12) | ||
| PEL | 108 (0.84) | 21 (0.16) | 4.79 ( | 30 (0.68) | 12 (0.27) | 2 (0.05) | 0.70 (0.70) | ||
| PUR | 146 (0.95) | 8 (0.05) | 27.60 ( | 46 (0.92) | 4 (0.08) | 0 (0.00) | 6.78 ( | ||
| EAS | CDX | 125 (0.88) | 17 (0.12) | 10.80 ( | 39 (0.80) | 9 (0.18) | 1 (0.02) | 1.60 (0.45) | |
| CHB | 133 (0.83) | 27 (0.17) | 4.84 ( | 39 (0.68) | 17 (0.30) | 1 (0.02) | 2.51 (0.29) | ||
| CHS | 126 (0.80) | 32 (0.20) | 2.00 (0.16) | 33 (0.62) | 19 (0.36) | 1 (0.02) | 3.28 (0.19) | ||
| JPT | 115 (0.76) | 37 (0.24) | 0.27 (0.60) | 28 (0.58) | 18 (0.38) | 2 (0.04) | 2.53 (0.28) | ||
| KHV | 136 (0.90) | 16 (0.10) | 13.9 ( | 43 (0.81) | 9 (0.17) | 1 (0.02) | 1.92 (0.38) | ||
| EUR | CEU | 148 (0.99) | 1 (0.01) | 43.70 ( | 49 (0.98) | 1 (0.02) | 0 (0.00) | 12.00 ( | |
| FIN | 160 (1.00) | 0 (0.00) | 50.00 ( | 61 (1.00) | 0 (0.00) | 0 (0.00) | 18.60 ( | ||
| GBR | 134 (0.98) | 2 (0.02) | 37.20 ( | 44 (0.98) | 1 (0.02) | 0 (0.00) | 10.70 ( | ||
| IBS | 160 (1.00) | 0 (0.00) | 50.00 ( | 53 (1.00) | 0 (0.00) | 0 (0.00) | 16.30 ( | ||
| TSI | 161 (1.00) | 0 (0.00) | 50.30 ( | 54 (1.00) | 0 (0.00) | 0 (0.00) | 16.60 ( | ||
| SAS | BEB | 103 (0.79) | 27 (0.21) | 1.50 (0.22) | 26 (0.59) | 18 (0.41) | 0 (0.00) | 6.03 ( | |
| GIH | 127 (0.85) | 23 (0.15) | 6.35 ( | 32 (0.68) | 12 (0.26) | 3 (0.06) | 0.31 (0.86) | ||
| ITU | 101 (0.70) | 44 (0.30) | 0.47 (0.49) | 21 (0.49) | 17 (0.40) | 5 (0.11) | 3.55 (0.17) | ||
| PJL | 109 (0.76) | 35 (0.24) | 0.27 (0.60) | 31 (0.65) | 14 (0.29) | 3 (0.06) | 0.74 (0.69) | ||
| STU | 119 (0.80) | 30 (0.20) | 2.01 (0.16) | 30 (0.64) | 17 (0.36) | 0 (0.00) | 5.32 (0.07) | ||
| IND | 128 (0.73) | 47 (0.27) | - | 18 (0.72) | 5 (0.20) | 2 (0.08) | - | ||
AFR African, ACB African Caribbeans in Barbados, ASW Americans of African Ancestry in SW USA, ESN Esan in Nigeria, LWK Luhya in Webuye, Kenya, MAG Mandinka in The Gambia, MSL Mende in Sierra Leone, YRI Yoruba in Ibadan, Nigeria, AMR American, CLM, Colombians from Medellin, Colombia, MXL Mexican Ancestry from Los Angeles USA, PEL Peruvians from Lima, Peru, PUR Puerto Ricans from Puerto Rico, EAS East Asian, CDX Chinese Dai in Xishuangbanna, China, CHB Han Chinese in Bejing, China, CHS Southern Han Chinese, JPT Japanese in Tokyo, Japan, KHW Kinh in Ho Chi Minh City, Vietnam, EUR European, CEU Utah Residents (CEPH) with Northern and Western European Ancestry, FIN Finnish in Finland, GBR British in England and Scotland, IBS Iberian Population in Spain, TSI Toscani in Italia, SAS South Asian, BEB Bengali from Bangladesh, GIH Gujarati Indian from Houston, Texas, ITU Indian Telugu from the UK, PJL Punjabi from Lahore, Pakistan, STU Sri Lankan Tamil from the UK, IND Indo-Caucasoid control population. Significant differences are presented in bold
Comparative analysis on allelic frequencies of MAOB variants showing significant association with ADHD
| Variants | Alleles | Groups | Control | Proband | Chi-square ( | Odds Ratio (95 % confidence interval) | Power |
|---|---|---|---|---|---|---|---|
| rs56220155 |
| Malea | 0.4 | 0.28 | 4.2 (0.04) | 1.72 (1.02–2.9) | 54 % |
|
| 0.6 | 0.72 | |||||
| rs2283728 |
| Allb | 0.42 | 0.21 | 19.15 (1.21e-005) | 2.71 (1.73–4.26) | 99 % |
|
| 0.58 | 0.79 | |||||
|
| Malea | 0.47 | 0.2 | 21.55 (3.45e-006) | 3.4 (2.01–5.74) | 99.63 % | |
|
| 0.53 | 0.8 | |||||
| rs3027440 |
| Allb | 0.73 | 0.82 | 4.13 (0.04) | 1.68 (1.02–2.78) | 53 % |
|
| 0.27 | 0.18 | |||||
|
| Malea | 0.7 | 0.83 | 5.83 (0.02) | 2.03 (1.14–3.62) | 66 % | |
|
| 0.3 | 0.17 |
aN = 125 Control/126 proband
bN = 125 male and 25 female controls/126 male and 24 female probands
Fig. 1Pairwise linkage disequilibrium between the studied variants. a controls; b ADHD probands; c male controls; d male probands; e female controls; f female probands. D’ is a measure of frequency of association of alleles at 2 loci and numbers represent the D’ value expressed as a percentile. Diamonds without numbers represent D’ values of 1.0
Population-based comparative analysis on haplotype frequency
| Groups | Variant combinations | `Haplotypes | Control | Proband | Chi-square ( | Odds Ratio (95 % confidence interval) |
|---|---|---|---|---|---|---|
| Alla | rs4824562-rs56220155-rs2283728-rs2283727-rs3027441-rs6324-rs3027440 |
| 0.04 | 0 | 5.27 ( | 0.13 (0.03–0.65) |
|
| 0.32 | 0.49 | 12.14 ( | 2.08 (1.36–3.19) | ||
|
| 0.02 | 0 | 4.02 ( | 0.13 (0.02–0.96) | ||
|
| 0.03 | 0 | 6.07 ( | 0.13 (0.03–0.66) | ||
|
| 0.03 | 0.09 | 4.06 ( | 2.5 (1.04–6.03) | ||
|
| 0.07 | 0.15 | 4.29 ( | 2.21 (1.13–4.32) | ||
|
| 0.03 | 0 | 5.04 ( | 0.13 (0.02–0.78) | ||
|
| 0.03 | 0 | 4.03 ( | 0.13 (0.02–0.88) | ||
|
| 0.08 | 0.18 | 6.26 ( | 2.46 (1.33–4.58) | ||
|
| 0.02 | 0 | 4.02 ( | 0.13 (0.02–0.96) | ||
|
| 0.02 | 0 | 4.06 ( | 0.13 (0.02–0.91) | ||
|
| 0.04 | 0 | 7.05 ( | 0.13 (0.03–0.57) | ||
|
| 0.02 | 0 | 3.01 (0.08) | 0.14 (0.01–1.3) | ||
| rs2283728-rs3027440 |
| 0.11 | 0.02 | 9.43 ( | 0.25 (0.11–0.57) | |
|
| 0.47 | 0.77 | 32.72 ( | 3.6 (2.34–5.55) | ||
|
| 0.16 | 0.16 | 0.07 (0.78) | 0.98 (0.55–1.75) | ||
|
| 0.27 | 0.05 | 28.27 ( | 0.2 (0.12–0.36) | ||
| Maleb | rs4824562-rs56220155-rs2283728-rs2283727-rs3027441-rs6324-rs3027440 |
| 0.05 | 0 | 6.2 ( | 0.13 (0.03–0.65) |
|
| 0.26 | 0.53 | 19.98 ( | 3.16 (1.2–5.23) | ||
|
| 0.03 | 0 | 4.1 ( | 0.13 (0.02–0.94) | ||
|
| 0.03 | 0 | 4.1 ( | 0.13 (0.02–0.94) | ||
|
| 0.04 | 0.15 | 8.91 ( | 3.58 (1.55–8.3) | ||
|
| 0.06 | 0.008 | 5.71 ( | 0.2 (0.05–0.75) | ||
|
| 0.04 | 0 | 5.14 ( | 0.13 (0.02–0.76) | ||
|
| 0.03 | 0 | 4.1 ( | 0.13 (0.02–0.94) | ||
|
| 0.06 | 0.17 | 7.75 ( | 3.04 (1.39–6.66) | ||
|
| 0.03 | 0 | 4.1 ( | 0.13 (0.02–0.94) | ||
|
| 0.03 | 0 | 4.1 ( | 0.13 (0.02–0.94) | ||
|
| 0.02 | 0 | 3.06 (0.08) | 0.13 (0.01–1.28) | ||
|
| 0.02 | 0 | 3.06 (0.08) | 0.13 (0.01–1.28) | ||
| rs56220155-rs2283728-rs3027440 |
| 0.13 | 0.02 | 11.85 ( | 0.19 (0.07–0.49) | |
|
| 0.33 | 0.71 | 35.98 ( | 4.52 (2.76–7.42) | ||
|
| 0.05 | 0 | 6.2 ( | 0.13 (0.03–0.65) | ||
|
| 0.1 | 0 | 12.7 ( | 0.12 (0.04–0.39) | ||
|
| 0.02 | 0 | 2.03 (0.15) | 0.13 (0.008–2.14) | ||
|
| 0.06 | 0.08 | 0.54 (0.46) | 1.45 (0.54–3.86) | ||
|
| 0.11 | 0.16 | 1.17 (0.28) | 1.49 (0.72–3.06) | ||
|
| 0.22 | 0.04 | 17.54 ( | 0.21 (0.1–0.43) | ||
| Femalec | rs4824562-rs56220155-rs2283728-rs2283727-rs3027441-rs6324-rs3027440 |
| 0 | 0.08 | 3.69 ( | 8.23 (1.13–59.77) |
|
| 0.08 | 0 | 4.16 ( | 0.13 (0.02–0.97) |
a N = 125 male and 25 female controls/126 male and 24 female probands
b N = control 125/126 probands
c N = 25 control/24 probands
Statistically significant differences are presented in bold
Fig. 2Interaction graph generated through Multifactor Dimensionality Reduction (MDR) software. a Population based analysis for male subjects; b Population based analysis for female subjects. The graphical interaction model describe the percentage of entropy (i.e. information gain or IG) in case-control status that is explained by each factor (i.e. gene variant) or two-way interaction. Two-way interactions between factors are depicted by line accompanied by a percent of entropy explained by that interaction. Values inside large boxes on nodes indicate information gain (IG) of individual/independent main effect of each polymorphic variant, whereas values inside small boxes between nodes exemplify IG of pairwise combination/interactive effects of respective variants. Positive IG values, between the nodes, indicate the synergistic interactions; whereas negative IG values indicate the redundancy between the respective nodes/variants. Schematic coloration represents a continuum from synergy to redundancy. The red lines represent a high degree of synergy. The orange lines represent moderate synergy. The golden yellow lines accompanied by a positive percent of entropy represent minimal synergy, whereas the golden yellow lines accompanied by a negative percent of entropy represent minimal redundancy. Green line represents high redundancy
Association of alleles with PACS scores of male ADHD probands (N = 126)
| Variants | Alleles | PACS scores for conduct problems | |
|---|---|---|---|
| Mean ± SE |
| ||
| rs4824562 |
| 18.19 ± 1.69 | 0.37 |
|
| 16.75 ± 4.19 | ||
| rs56220155 |
| 14.42 ± 2.42 |
|
|
| 19.81 ± 1.94 | ||
| rs2283728 |
| 14.46 ± 2.73 | 0.11 |
|
| 19.05 ± 1.83 | ||
| rs2283727 |
| 19.05 ± 1.83 | 0.11 |
|
| 14.46 ± 2.73 | ||
| rs3027441 |
| 16 ± 2.99 | 0.27 |
|
| 18.47 ± 1.79 | ||
| rs6324 |
| 18.47 ± 1.79 | 0.27 |
|
| 16 ± 2.99 | ||
| rs3027440 |
| 18.6 ± 1.74 | 0.19 |
|
| 14.78 ± 3.18 | ||
aAnalyzed through Student’s t-test; statistically significant differences are presented in bold