Literature DB >> 27341455

Effectiveness of ecological rescue for altered soil microbial communities and functions.

Kadiya Calderón1, Aymé Spor1, Marie-Christine Breuil1, David Bru1, Florian Bizouard1, Cyrille Violle2, Romain L Barnard1, Laurent Philippot1.   

Abstract

Soil ecosystems worldwide are subjected to marked modifications caused by anthropogenic disturbances and global climate change, resulting in microbial diversity loss and alteration of ecosystem functions. Despite the paucity of studies, restoration ecology provides an appropriate framework for testing the potential of manipulating soil microbial communities for the recovery of ecosystem functioning. We used a reciprocal transplant design in experimentally altered microbial communities to investigate the effectiveness of introducing microbial communities in degraded soil ecosystems to restore N-cycle functioning. Microbial diversity loss resulted in alternative compositional states associated with impaired N-cycle functioning. Here, the addition of complex microbial communities to these altered communities revealed a pivotal role of deterministic community assembly processes. The diversity of some alternative compositional states was successfully increased but without significant restoration of soil N-cycle functioning. However, in the most degraded alternative state, the introduction of new microbial communities caused an overall decrease in phylogenetic diversity and richness. The successful soil colonization by newly introduced species for some compositional states indicates that priority effects could be overridden when attempting to manipulate microbial communities for soil restoration. Altogether, our result showed consistent patterns within restoration treatments with minor idiosyncratic effects. This suggests the predominance of deterministic processes and the predictability of restoration trajectories, which could be used to guide the effective management of microbial community assemblages for ecological restoration of soils.

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Year:  2016        PMID: 27341455      PMCID: PMC5315478          DOI: 10.1038/ismej.2016.86

Source DB:  PubMed          Journal:  ISME J        ISSN: 1751-7362            Impact factor:   10.302


  42 in total

1.  Diversity and abundance of Crenarchaeota in terrestrial habitats studied by 16S RNA surveys and real time PCR.

Authors:  Torsten Ochsenreiter; Drazenka Selezi; Achim Quaiser; Liza Bonch-Osmolovskaya; Christa Schleper
Journal:  Environ Microbiol       Date:  2003-09       Impact factor: 5.491

2.  Niche tradeoffs, neutrality, and community structure: a stochastic theory of resource competition, invasion, and community assembly.

Authors:  David Tilman
Journal:  Proc Natl Acad Sci U S A       Date:  2004-07-08       Impact factor: 11.205

3.  Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi.

Authors:  Conrad L Schoch; Keith A Seifert; Sabine Huhndorf; Vincent Robert; John L Spouge; C André Levesque; Wen Chen
Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-27       Impact factor: 11.205

Review 4.  How understanding aboveground-belowground linkages can assist restoration ecology.

Authors:  Paul Kardol; David A Wardle
Journal:  Trends Ecol Evol       Date:  2010-09-29       Impact factor: 17.712

5.  Beta diversity as the variance of community data: dissimilarity coefficients and partitioning.

Authors:  Pierre Legendre; Miquel De Cáceres
Journal:  Ecol Lett       Date:  2013-07-01       Impact factor: 9.492

Review 6.  The microbial engines that drive Earth's biogeochemical cycles.

Authors:  Paul G Falkowski; Tom Fenchel; Edward F Delong
Journal:  Science       Date:  2008-05-23       Impact factor: 47.728

7.  Low biodiversity state persists two decades after cessation of nutrient enrichment.

Authors:  Forest Isbell; David Tilman; Stephen Polasky; Seth Binder; Peter Hawthorne
Journal:  Ecol Lett       Date:  2013-01-10       Impact factor: 9.492

8.  Quantitative detection of the nosZ gene, encoding nitrous oxide reductase, and comparison of the abundances of 16S rRNA, narG, nirK, and nosZ genes in soils.

Authors:  S Henry; D Bru; B Stres; S Hallet; L Philippot
Journal:  Appl Environ Microbiol       Date:  2006-08       Impact factor: 4.792

9.  Structural and functional loss in restored wetland ecosystems.

Authors:  David Moreno-Mateos; Mary E Power; Francisco A Comín; Roxana Yockteng
Journal:  PLoS Biol       Date:  2012-01-24       Impact factor: 8.029

10.  When, where and how does microbial community composition matter?

Authors:  Diana R Nemergut; Ashley Shade; Cyrille Violle
Journal:  Front Microbiol       Date:  2014-09-26       Impact factor: 5.640

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  23 in total

1.  Concentration-dependent responses of soil bacterial, fungal and nitrifying communities to silver nano and micron particles.

Authors:  Conor Francis McGee; Sean Storey; Nicholas Clipson; Evelyn Doyle
Journal:  Environ Sci Pollut Res Int       Date:  2018-04-29       Impact factor: 4.223

2.  Experimental Testing of Dispersal Limitation in Soil Bacterial Communities with a Propagule Addition Approach.

Authors:  Fen-Guo Zhang; Thomas Bell; Quan-Guo Zhang
Journal:  Microb Ecol       Date:  2018-11-12       Impact factor: 4.552

Review 3.  Community coalescence: an eco-evolutionary perspective.

Authors:  Meaghan Castledine; Pawel Sierocinski; Daniel Padfield; Angus Buckling
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2020-03-23       Impact factor: 6.237

4.  The role of competition versus cooperation in microbial community coalescence.

Authors:  Pablo Lechón-Alonso; Tom Clegg; Jacob Cook; Thomas P Smith; Samraat Pawar
Journal:  PLoS Comput Biol       Date:  2021-11-08       Impact factor: 4.475

Review 5.  Microbial Community Resilience across Ecosystems and Multiple Disturbances.

Authors:  Laurent Philippot; Bryan S Griffiths; Silke Langenheder
Journal:  Microbiol Mol Biol Rev       Date:  2021-03-31       Impact factor: 11.056

6.  Microbiome Selection Could Spur Next-Generation Plant Breeding Strategies.

Authors:  Murali Gopal; Alka Gupta
Journal:  Front Microbiol       Date:  2016-12-07       Impact factor: 5.640

7.  Microbial Community Coalescence for Microbiome Engineering.

Authors:  Matthias C Rillig; Alia Tsang; Julien Roy
Journal:  Front Microbiol       Date:  2016-12-06       Impact factor: 5.640

8.  Soil microbiome transfer method affects microbiome composition, including dominant microorganisms, in a novel environment.

Authors:  Mia M Howard; Terrence H Bell; Jenny Kao-Kniffin
Journal:  FEMS Microbiol Lett       Date:  2017-06-15       Impact factor: 2.742

9.  Long-term soil metal exposure impaired temporal variation in microbial metatranscriptomes and enriched active phages.

Authors:  Samuel Jacquiod; Inês Nunes; Asker Brejnrod; Martin A Hansen; Peter E Holm; Anders Johansen; Kristian K Brandt; Anders Priemé; Søren J Sørensen
Journal:  Microbiome       Date:  2018-12-13       Impact factor: 14.650

10.  The impact of propagule pressure on whole community invasions in biomethane-producing communities.

Authors:  Pawel Sierocinski; Jesica Soria Pascual; Daniel Padfield; Mike Salter; Angus Buckling
Journal:  iScience       Date:  2021-05-28
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