Literature DB >> 27338201

Theoretical investigation of the mechanism of nitroxyl decomposition in aqueous solution.

Mauro Bringas1, Jonathan Semelak1, Ari Zeida1, Dario A Estrin2.   

Abstract

Nitroxyl (HNO) is a species that has been proposed recently to play different roles in nitrosative stress processes. HNO decomposition in aqueous solution leading to N2O is a fast reaction that competes with many biochemical reactions in which HNO may be involved. Since molecular determinants of this reaction are still not fully understood, we present in this work an exhaustive analysis of the mechanism in terms of electronic-structure calculations as well as state of the art hybrid quantum mechanics/molecular mechanics molecular dynamics simulations. We characterized the reaction mechanism and computed free energy profiles for the reaction steps using an umbrella sampling procedure. We propose a first dimerization step followed by an acid-base equilibria. Afterwards, the product is formed from two main pathways involving cis-hyponitrous acid (cis-HONNOH) and its conjugate basis as intermediate. Our calculations show preference for the anionic pathway under physiological conditions and allow us to rationalize the results in terms of a molecular description of specific interactions with the solvent. These interactions turn out to be determinant in the stabilization of transition states and, thereby, modifying the free energy barriers. We predict a strong pH-dependence of the overall kinetics of N2O formation, related with the fraction of reactive species available in solution. Finally, we suggest experimental procedures which could validate this mechanism.
Copyright © 2016 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Aqueous decomposition; Mechanism; Nitroxyl; QM/MM; Reactive nitrogen species

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Year:  2016        PMID: 27338201     DOI: 10.1016/j.jinorgbio.2016.06.016

Source DB:  PubMed          Journal:  J Inorg Biochem        ISSN: 0162-0134            Impact factor:   4.155


  1 in total

Review 1.  Chemical Reactivity and Spectroscopy Explored From QM/MM Molecular Dynamics Simulations Using the LIO Code.

Authors:  Juan P Marcolongo; Ari Zeida; Jonathan A Semelak; Nicolás O Foglia; Uriel N Morzan; Dario A Estrin; Mariano C González Lebrero; Damián A Scherlis
Journal:  Front Chem       Date:  2018-03-21       Impact factor: 5.221

  1 in total

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