Literature DB >> 27334453

Computationally driven antibody engineering enables simultaneous humanization and thermostabilization.

Yoonjoo Choi1, Christian Ndong2, Karl E Griswold2,3,4, Chris Bailey-Kellogg1.   

Abstract

Humanization reduces the immunogenicity risk of therapeutic antibodies of non-human origin. Thermostabilization can be critical for clinical development and application of therapeutic antibodies. Here, we show that the computational antibody redesign method Computationally Driven Antibody Humanization (CoDAH) enables these two goals to be accomplished simultaneously and seamlessly. A panel of CoDAH designs for the murine parent of cetuximab, a chimeric anti-EGFR antibody, exhibited both substantially improved thermostabilities and substantially higher levels of humanness, while retaining binding activity near the parental level. The consistently high quality of the turnkey CoDAH designs, over a whole panel of variants, suggests that the computationally directed approach encapsulates key determinants of antibody structure and function.
© The Author 2016. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.

Entities:  

Keywords:  antibody; cetuximab; computational protein design; humanization; thermostability

Mesh:

Substances:

Year:  2016        PMID: 27334453      PMCID: PMC5036863          DOI: 10.1093/protein/gzw024

Source DB:  PubMed          Journal:  Protein Eng Des Sel        ISSN: 1741-0126            Impact factor:   1.650


  50 in total

Review 1.  Antibody humanization: a case of the 'Emperor's new clothes'?

Authors:  M Clark
Journal:  Immunol Today       Date:  2000-08

2.  A molecular immunology approach to antibody humanization and functional optimization.

Authors:  Greg A Lazar; John R Desjarlais; Jonathan Jacinto; Sher Karki; Philip W Hammond
Journal:  Mol Immunol       Date:  2006-10-31       Impact factor: 4.407

3.  Structural determinants in the sequences of immunoglobulin variable domain.

Authors:  C Chothia; I Gelfand; A Kister
Journal:  J Mol Biol       Date:  1998-05-01       Impact factor: 5.469

4.  An integrated approach to extreme thermostabilization and affinity maturation of an antibody.

Authors:  Audrey D McConnell; Vladimir Spasojevich; John L Macomber; Irina P Krapf; Andy Chen; Joseph C Sheffer; Ashley Berkebile; Robert A Horlick; Steven Neben; David J King; Peter M Bowers
Journal:  Protein Eng Des Sel       Date:  2012-11-19       Impact factor: 1.650

5.  Structure-guided deimmunization of therapeutic proteins.

Authors:  Andrew S Parker; Yoonjoo Choi; Karl E Griswold; Chris Bailey-Kellogg
Journal:  J Comput Biol       Date:  2013-02       Impact factor: 1.479

6.  A divide-and-conquer approach to determine the Pareto frontier for optimization of protein engineering experiments.

Authors:  Lu He; Alan M Friedman; Chris Bailey-Kellogg
Journal:  Proteins       Date:  2011-12-16

7.  The immunogenicity of humanized and fully human antibodies: residual immunogenicity resides in the CDR regions.

Authors:  Fiona A Harding; Marcia M Stickler; Jennifer Razo; Robert B DuBridge
Journal:  MAbs       Date:  2010-05-01       Impact factor: 5.857

8.  A general approach to antibody thermostabilization.

Authors:  Audrey D McConnell; Xue Zhang; John L Macomber; Betty Chau; Joseph C Sheffer; Sorena Rahmanian; Eric Hare; Vladimir Spasojevic; Robert A Horlick; David J King; Peter M Bowers
Journal:  MAbs       Date:  2014       Impact factor: 5.857

9.  Flow-cytometric isolation of human antibodies from a nonimmune Saccharomyces cerevisiae surface display library.

Authors:  Michael J Feldhaus; Robert W Siegel; Lee K Opresko; James R Coleman; Jane M Weaver Feldhaus; Yik A Yeung; Jennifer R Cochran; Peter Heinzelman; David Colby; Jeffrey Swers; Christilyn Graff; H Steven Wiley; K Dane Wittrup
Journal:  Nat Biotechnol       Date:  2003-01-21       Impact factor: 54.908

10.  Monoclonal antibody cetuximab binds to and down-regulates constitutively activated epidermal growth factor receptor vIII on the cell surface.

Authors:  Dipa Patel; Armin Lahiji; Sheetal Patel; Matthew Franklin; Xenia Jimenez; Daniel J Hicklin; Xiaoqiang Kang
Journal:  Anticancer Res       Date:  2007 Sep-Oct       Impact factor: 2.480

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  5 in total

Review 1.  Design and engineering of deimmunized biotherapeutics.

Authors:  Karl E Griswold; Chris Bailey-Kellogg
Journal:  Curr Opin Struct Biol       Date:  2016-06-17       Impact factor: 6.809

2.  Engineering an Enhanced EGFR Engager: Humanization of Cetuximab for Improved Developability.

Authors:  Dennis R Goulet; Soumili Chatterjee; Wai-Ping Lee; Andrew B Waight; Yi Zhu; Amanda Nga-Sze Mak
Journal:  Antibodies (Basel)       Date:  2022-01-13

3.  Co-optimization of therapeutic antibody affinity and specificity using machine learning models that generalize to novel mutational space.

Authors:  Emily K Makowski; Patrick C Kinnunen; Jie Huang; Lina Wu; Matthew D Smith; Tiexin Wang; Alec A Desai; Craig N Streu; Yulei Zhang; Jennifer M Zupancic; John S Schardt; Jennifer J Linderman; Peter M Tessier
Journal:  Nat Commun       Date:  2022-07-01       Impact factor: 17.694

4.  Structural delineation of potent transmission-blocking epitope I on malaria antigen Pfs48/45.

Authors:  Prasun Kundu; Anthony Semesi; Matthijs M Jore; Merribeth J Morin; Virginia L Price; Alice Liang; Jingxing Li; Kazutoyo Miura; Robert W Sauerwein; C Richter King; Jean-Philippe Julien
Journal:  Nat Commun       Date:  2018-10-26       Impact factor: 14.919

Review 5.  Discovery-stage identification of drug-like antibodies using emerging experimental and computational methods.

Authors:  Emily K Makowski; Lina Wu; Priyanka Gupta; Peter M Tessier
Journal:  MAbs       Date:  2021 Jan-Dec       Impact factor: 5.857

  5 in total

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