| Literature DB >> 27325752 |
A Faiz1,2, C Donovan3,4, M Ae Nieuwenhuis2, M van den Berge2, D S Postma2, S Yao5, C Y Park6, R Hirsch6, J J Fredberg6, G Tjin1, A J Halayko7, K L Rempel7, J P T Ward8, T Lee8, Y Bossé9, D C Nickle10, M Obeidat11, Judith M Vonk12, J L Black1,13, B G Oliver1,14, R Krishnan5, B McParland13, J E Bourke3,4, J K Burgess1,13,15.
Abstract
BACKGROUND: Asthma affects 300 million people worldwide. In asthma, the major cause of morbidity and mortality is acute airway narrowing, due to airway smooth muscle (ASM) hypercontraction, associated with airway remodelling. However, little is known about the transcriptional differences between healthy and asthmatic ASM cells.Entities:
Keywords: Asthma; Asthma Genetics
Mesh:
Substances:
Year: 2016 PMID: 27325752 PMCID: PMC5329048 DOI: 10.1136/thoraxjnl-2015-207236
Source DB: PubMed Journal: Thorax ISSN: 0040-6376 Impact factor: 9.139
Figure 1Microarray analysis of asthmatic and healthy airway smooth muscle cells (ASMC). (A) Hierarchy cluster analysis comparing asthmatic (n=3) and healthy (n=3) ASMC expression profiles with the rows identifying genes with fold change >±2, p<0.05. (B) Enrichment of genes involved in the regulation of muscle contraction associated with genes upregulated in asthmatic ASMC relative to healthy controls (GSEA false discovery rate (FDR) <0.05). The coloured bar represents genes ranked based on their differential expression between asthmatic and healthy ASMC. Vertical bars represent the running GSEA enrichment score and location (in the ranked gene list) of genes involved in the regulation of muscle contraction.
Figure 2ASMC expression of latrophilins in cells from asthmatic and healthy airways. ASMC were grown to confluence in growth media (DMEM, 5% FBS and 1% antibiotics) and quiesced (DMEM, 0.1% BSA and 1% antibiotics) for 72 hours and total mRNA was extracted. qPCR of latrophilin family members LPHN1 (A) and 3 (B) comparing asthmatic (n=15) and healthy (n=6) ASMC. (C) Immunohistochemistry for LPHN3, comparing healthy (n=6) and asthma (n=11) donor bronchial sections (representative images). Specific staining was detected using a chemical chromophore 3,3'-diaminobenzidine (DAB) (brown) and cell nucleus was counterstained with haematoxylin (blue)(scale 100 μm). (D) ASMC-specific LPHN3 in healthy and asthma donor sections were quantified and compared using computerised image analysis. Data are expressed as mean±SEM. Statistical analysis used was Mann-Whitney test. ASMC, airway smooth muscle cell; BSA, bovine serum albumin; DMEM, Dulbecco's Modified Eagle Medium; E, epithelium; FBS, foetal bovine serum; L, lumen; M, airway smooth muscle; ROI, region of interest.
SNPs for LPHN1 and LPHN3 associations with asthma
| CHR | BP | SNP | TA | OR | OR(R) | P | P(R) | I | FDR |
|---|---|---|---|---|---|---|---|---|---|
| LPHN1 | |||||||||
| 19 | 14120846 | A | 1.348 | 1.348 | 0.008 | 0.008 | 0 | 0.016 | |
| 19 | 14159442 | rs2420416 | G | 1.032 | 1.032 | 0.676 | 0.676 | 0 | 1 |
| LPHN3 | |||||||||
| 4 | 62327627 | rs12509742 | A | 0.986 | 0.986 | 0.829 | 0.829 | 0 | 1 |
| 4 | 62330503 | rs2345043 | T | 0.982 | 0.982 | 0.788 | 0.788 | 0 | 1 |
| 4 | 62352873 | rs1450903 | G | 0.848 | 0.846 | 0.095 | 0.356 | 70.21 | 1 |
| 4 | 62354238 | rs10517547 | A | 0.962 | 0.960 | 0.665 | 0.808 | 71.98 | 1 |
| 4 | 62376287 | rs11734607 | T | 1.010 | 1.009 | 0.895 | 0.917 | 29.69 | 1 |
| 4 | 62380952 | rs2345041 | A | 1.083 | 1.083 | 0.364 | 0.364 | 0 | 1 |
| 4 | 62401922 | rs2015569 | T | 0.899 | 0.898 | 0.297 | 0.508 | 60.12 | 1 |
| 4 | 62409295 | rs7667328 | G | 0.978 | 0.983 | 0.839 | 0.934 | 71.67 | 1 |
| 4 | 62409469 | rs10446786 | G | 1.008 | 1.007 | 0.915 | 0.932 | 24.10 | 1 |
| 4 | 62416032 | rs13110933 | C | 1.069 | 1.069 | 0.314 | 0.314 | 0 | 1 |
| 4 | 62422136 | rs6551665 | G | 0.907 | 0.907 | 0.150 | 0.272 | 41.51 | 1 |
| 4 | 62422269 | rs6846033 | C | 0.980 | 0.980 | 0.801 | 0.801 | 0 | 1 |
| 4 | 62430979 | rs9683662 | T | 1.029 | 1.029 | 0.691 | 0.691 | 0 | 1 |
| 4 | 62436915 | rs6858066 | G | 1.039 | 1.039 | 0.563 | 0.621 | 28.83 | 1 |
| 4 | 62441865 | rs11131347 | T | 0.928 | 0.928 | 0.246 | 0.246 | 0 | 1 |
| 4 | 62444465 | rs1470724 | C | 1.093 | 1.093 | 0.227 | 0.227 | 0 | 1 |
| 4 | 62446070 | rs6551666 | C | 1.000 | 1.002 | 0.999 | 0.990 | 60.75 | 1 |
| 4 | 62471863 | rs10517549 | G | 1.016 | 1.016 | 0.831 | 0.831 | 0 | 1 |
| 4 | 62483323 | rs734644 | T | 1.027 | 1.027 | 0.729 | 0.729 | 0 | 1 |
| 4 | 62499334 | rs1450896 | A | 0.776 | 0.775 | 0.182 | 0.318 | 44.74 | 1 |
| 4 | 62501063 | rs995447 | C | 1.046 | 1.046 | 0.729 | 0.729 | 0 | 1 |
| 4 | 62513128 | rs1510925 | G | 1.062 | 1.064 | 0.473 | 0.601 | 50.00 | 1 |
| 4 | 62517697 | rs1397545 | A | 1.052 | 1.052 | 0.646 | 0.646 | 0 | 1 |
| 4 | 62521660 | rs1397543 | T | 1.041 | 1.043 | 0.633 | 0.724 | 50.03 | 1 |
| 4 | 62528085 | rs1397548 | A | 1.062 | 1.062 | 0.416 | 0.416 | 0 | 1 |
| 4 | 62533752 | C | 1.207 | 1.207 | 0.034 | 0.034 | 0 | 1 | |
| 4 | 62539254 | rs10017760 | A | 1.023 | 1.023 | 0.797 | 0.797 | 0 | 1 |
| 4 | 62544980 | rs2271339 | G | 1.073 | 1.072 | 0.352 | 0.547 | 56.20 | 1 |
| 4 | 62550048 | rs13115125 | G | 1.044 | 1.043 | 0.511 | 0.765 | 78.09 | 1 |
| 4 | 62566026 | rs1510920 | C | 0.852 | 0.839 | 0.281 | 0.479 | 63.93 | 1 |
| 4 | 62584757 | rs6827266 | T | 0.950 | 0.950 | 0.431 | 0.431 | 0 | 1 |
| 4 | 62597619 | rs1397546 | C | 0.918 | 0.914 | 0.198 | 0.554 | 80.54 | 1 |
| 4 | 62606392 | rs11736888 | T | 1.016 | 1.016 | 0.839 | 0.839 | 0 | 1 |
BP, base pair; CHR, chromosome; FDR, false discovery rate; I, heterogeneity of samples; LPNH, latrophilin; R, random effect; SNP, single nucleotide polymorphism; TA, tested allele bold indicates SNPs associated with asthma.
eQTL analysis of rs3010256 in LPHN1
| Probe | SNP | TA | (ref 36.3) Start probe | (ref 36.3) End probe | Cohort | β | SE | p Value |
|---|---|---|---|---|---|---|---|---|
| rs3810256 | A | 14119550 | 14177997 | Groningen | 0.048 | 0.034 | 0.160 | |
| Laval | 0.076 | 0.023 | 1.000E-03 | |||||
| UBC | 0.038 | 0.028 | 0.175 | |||||
| 0.058 | 0.016 | 2.330E-04 |
eQTL, expression QTL; LPNH, latrophilin; meta, combined analysis of Groningen, Laval and UBC cohorts; SNP, single nucleotide polymorphism; TA, tested allele; UBC, University of British Columbia.
Figure 3FLRT3 effect on IASMC attachment and proliferation in asthma and healthy donor cells. (A) IASMC were grown to confluence in growth medium (DMEM, 5% FBS and 1% antibiotics) and quiesced (DMEM, 0.1% BSA and 1% antibiotics) for 24 hours, seeded at 16 000 ASMC per well in quiescing media and left for 2 hours at 37°C in 5% CO2 (n=7). Attached cells were stained with toluidine blue measured by spectrophotometry at absorbance 595 nm. Data are expressed as mean±SEM. Friedman test, Dunn's correction was used to compare control to other treatments. IASMC proliferation was measured by manual cell count following quiescing for 72 hours and then treatment with (B) quiescing medium (control), FLRT3 (10 ng/mL), FLRT3 (10 ng/mL)+PD98059 (10 μM) and FLRT3 (10 ng/mL) +LY294002 (3 μM) for 72 hours (asthmatics, n=6 and healthy donors, n=6). Data are expressed as mean±SEM. Friedman test, Dunn's correction was used to compare (#=p<0.05 compared with control, ‡=p<0.05 compared with FLRT3). (C) ASMC were seeded and grown to confluency and quiesced for 72 hours and then treated with quiescing medium (control), FLRT3 (10 ng/mL), FLRT3 (10 ng/mL)+PD98059 (10 μM) and FLRT3 (10 ng/mL)+LY294002 (3 μM). (D) Representative western immunoblot for pERK1/2, total ERK1/2 and GAPDH H (n=8) (D) Densitometric analysis of ERK1/2 western. Data are expressed as mean±SEM. Friedman test, Dunn's correction was used to compare. ANOVA, analysis of variance; ASMC, airway smooth muscle cells; BSA, bovine serum albumin; DMEM=Dulbecco's Modified Eagle Medium; ERK1/2, extracellular signal-regulated protein kinases 1 and 2; FBS, foetal bovine serum; FLRT3, fibronectin leucine rich transmembrane protein 3; GAPDH, glyceraldehyde 3-phosphate dehydrogenase; IASMC, immortalised airway smooth muscle cells; LY, LY294002; PD, PD98059; pERK1/2, phosphorylated extracellular signal-regulated protein kinases 1 and 2.
Figure 4The effect of α-LTX and FLRT3 on mouse tracheal and bronchial preparations and airway smooth muscle cells (ASMC) contraction assays Male Balb/C mice were killed by intraperitoneal injection of 0.4 mL sodium pentobarbitone (60 mg/mL) at 6–8 weeks of age. After an equilibration period of 30 min, tissues were contracted to KPSS at differing tensions (1.2, 1.5, 1.8 mN for trachea; 1.0, 2.0, 3.0 mN for bronchi) to determine the optimal resting tension for each tissue that corresponded to the highest KPSS response. Tissues were then contracted to ACh (10−4 M) twice to determine the effect of maximum muscarinic receptor activation. α-LTX- (10 nM) induced contraction of trachea (A and C) and bronchi (D) in the absence (white bars) and presence (black bars) of atropine (3 μM), n=3–5. B and E) Concentration-dependent effect of FLRT3 (10–3000 pM) in mouse trachea in the presence (open circles, n=7) or absence of epithelium (light grey circles, n=4) or EP2 and EP4 antagonists (AH6809 3 μM and L-161982 1 μM) in the presence (black circles, n=6) or absence of epithelium (dark grey circles, n=4). Statistical analysis used was Mann-Whitney test. (F) Single cell contraction assay of ASMC treated with LTX (0.1, 1 nM), FLRT3 (1.75, 17.45 nM) or histamine (1 µM) for 30 min and then relaxed with isoprenaline (10 µM) (n=10). Statistical analysis used was Mann-Whitney test. All data are expressed as mean±SEM. Ach, acetylcholine; α-LTX, α latrotoxin, FLRT3, fibronectin leucine rich transmembrane protein 3.