Literature DB >> 27323006

Function-Space-Based Solution Scheme for the Size-Modified Poisson-Boltzmann Equation in Full-Potential DFT.

Stefan Ringe1, Harald Oberhofer1, Christoph Hille1, Sebastian Matera2, Karsten Reuter1.   

Abstract

The size-modified Poisson-Boltzmann (MPB) equation is an efficient implicit solvation model which also captures electrolytic solvent effects. It combines an account of the dielectric solvent response with a mean-field description of solvated finite-sized ions. We present a general solution scheme for the MPB equation based on a fast function-space-oriented Newton method and a Green's function preconditioned iterative linear solver. In contrast to popular multigrid solvers, this approach allows us to fully exploit specialized integration grids and optimized integration schemes. We describe a corresponding numerically efficient implementation for the full-potential density-functional theory (DFT) code FHI-aims. We show that together with an additional Stern layer correction the DFT+MPB approach can describe the mean activity coefficient of a KCl aqueous solution over a wide range of concentrations. The high sensitivity of the calculated activity coefficient on the employed ionic parameters thereby suggests to use extensively tabulated experimental activity coefficients of salt solutions for a systematic parametrization protocol.

Entities:  

Year:  2016        PMID: 27323006     DOI: 10.1021/acs.jctc.6b00435

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  5 in total

Review 1.  Implicit Solvation Methods for Catalysis at Electrified Interfaces.

Authors:  Stefan Ringe; Nicolas G Hörmann; Harald Oberhofer; Karsten Reuter
Journal:  Chem Rev       Date:  2021-12-20       Impact factor: 72.087

2.  Biomolecular QM/MM Simulations: What Are Some of the "Burning Issues"?

Authors:  Qiang Cui; Tanmoy Pal; Luke Xie
Journal:  J Phys Chem B       Date:  2021-01-06       Impact factor: 2.991

3.  Trends for isolated amino acids and dipeptides: Conformation, divalent ion binding, and remarkable similarity of binding to calcium and lead.

Authors:  M Ropo; V Blum; C Baldauf
Journal:  Sci Rep       Date:  2016-11-03       Impact factor: 4.379

4.  Understanding Interactions Driving the Template-Directed Self-Assembly of Colloidal Nanoparticles at Surfaces.

Authors:  Johnas Eklöf-Österberg; Joakim Löfgren; Paul Erhart; Kasper Moth-Poulsen
Journal:  J Phys Chem C Nanomater Interfaces       Date:  2020-02-04       Impact factor: 4.126

5.  MLSolvA: solvation free energy prediction from pairwise atomistic interactions by machine learning.

Authors:  Hyuntae Lim; YounJoon Jung
Journal:  J Cheminform       Date:  2021-07-31       Impact factor: 5.514

  5 in total

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