Literature DB >> 27322415

Latitude delineates patterns of biogeography in terrestrial Streptomyces.

Mallory J Choudoir1, James R Doroghazi1, Daniel H Buckley1.   

Abstract

The biogeography of Streptomyces was examined at regional spatial scales to identify factors that govern patterns of microbial diversity. Streptomyces are spore forming filamentous bacteria which are widespread in soil. Streptomyces strains were isolated from perennial grass habitats sampled across a spatial scale of more than 6000 km. Previous analysis of this geographically explicit culture collection provided evidence for a latitudinal diversity gradient in Streptomyces species. Here the hypothesis that this latitudinal diversity gradient is a result of evolutionary dynamics associated with historical demographic processes was evaluated. Historical demographic phenomena have genetic consequences that can be evaluated through analysis of population genetics. Population genetic approaches were applied to analyze population structure in six of the most numerically abundant and geographically widespread Streptomyces phylogroups from our culture collection. Streptomyces population structure varied at regional spatial scales, and allelic diversity correlated with geographic distance. In addition, allelic diversity and gene flow are partitioned by latitude. Finally, it was found that nucleotide diversity within phylogroups was negatively correlated with latitude. These results indicate that phylogroup diversification is constrained by dispersal limitation at regional spatial scales, and they are consistent with the hypothesis that historical demographic processes have influenced the contemporary biogeography of Streptomyces.
© 2016 Society for Applied Microbiology and John Wiley & Sons Ltd.

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Year:  2016        PMID: 27322415     DOI: 10.1111/1462-2920.13420

Source DB:  PubMed          Journal:  Environ Microbiol        ISSN: 1462-2912            Impact factor:   5.491


  13 in total

1.  Phylogenetic conservatism of thermal traits explains dispersal limitation and genomic differentiation of Streptomyces sister-taxa.

Authors:  Mallory J Choudoir; Daniel H Buckley
Journal:  ISME J       Date:  2018-06-07       Impact factor: 10.302

2.  Global-level population genomics reveals differential effects of geography and phylogeny on horizontal gene transfer in soil bacteria.

Authors:  Alex Greenlon; Peter L Chang; Zehara Mohammed Damtew; Atsede Muleta; Noelia Carrasquilla-Garcia; Donghyun Kim; Hien P Nguyen; Vasantika Suryawanshi; Christopher P Krieg; Sudheer Kumar Yadav; Jai Singh Patel; Arpan Mukherjee; Sripada Udupa; Imane Benjelloun; Imane Thami-Alami; Mohammad Yasin; Bhuvaneshwara Patil; Sarvjeet Singh; Birinchi Kumar Sarma; Eric J B von Wettberg; Abdullah Kahraman; Bekir Bukun; Fassil Assefa; Kassahun Tesfaye; Asnake Fikre; Douglas R Cook
Journal:  Proc Natl Acad Sci U S A       Date:  2019-07-08       Impact factor: 11.205

3.  Densities and inhibitory phenotypes among indigenous Streptomyces spp. vary across native and agricultural habitats.

Authors:  L K Otto-Hanson; L L Kinkel
Journal:  Microb Ecol       Date:  2019-10-28       Impact factor: 4.552

4.  Nationwide genomic atlas of soil-dwelling Listeria reveals effects of selection and population ecology on pangenome evolution.

Authors:  Jingqiu Liao; Xiaodong Guo; Daniel L Weller; Shaul Pollak; Daniel H Buckley; Martin Wiedmann; Otto X Cordero
Journal:  Nat Microbiol       Date:  2021-07-15       Impact factor: 17.745

Review 5.  Defining and quantifying the core microbiome: Challenges and prospects.

Authors:  Alexander T Neu; Eric E Allen; Kaustuv Roy
Journal:  Proc Natl Acad Sci U S A       Date:  2021-12-21       Impact factor: 12.779

6.  Diversification of Secondary Metabolite Biosynthetic Gene Clusters Coincides with Lineage Divergence in Streptomyces.

Authors:  Mallory J Choudoir; Charles Pepe-Ranney; Daniel H Buckley
Journal:  Antibiotics (Basel)       Date:  2018-02-13

7.  A Phylogenetic and Functional Perspective on Volatile Organic Compound Production by Actinobacteria.

Authors:  Mallory Choudoir; Sam Rossabi; Matthew Gebert; Detlev Helmig; Noah Fierer
Journal:  mSystems       Date:  2019-03-05       Impact factor: 6.496

Review 8.  The Best of All Worlds: Streptococcus pneumoniae Conjunctivitis through the Lens of Community Ecology and Microbial Biogeography.

Authors:  Lawson Ung; Paulo J M Bispo; Noelle C Bryan; Camille Andre; James Chodosh; Michael S Gilmore
Journal:  Microorganisms       Date:  2019-12-25

9.  Host Species and Geography Differentiate Honeybee Gut Bacterial Communities by Changing the Relative Contribution of Community Assembly Processes.

Authors:  Yuan Ge; Zhongwang Jing; Qingyun Diao; Ji-Zheng He; Yong-Jun Liu
Journal:  mBio       Date:  2021-06-01       Impact factor: 7.867

10.  A Latitudinal Diversity Gradient in Terrestrial Bacteria of the Genus Streptomyces.

Authors:  Cheryl P Andam; James R Doroghazi; Ashley N Campbell; Peter J Kelly; Mallory J Choudoir; Daniel H Buckley
Journal:  mBio       Date:  2016-04-12       Impact factor: 7.867

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