| Literature DB >> 27317328 |
Hiroaki Nishizawa1, Yoshifumi Nishimura1,2, Masato Kobayashi3,4,5, Stephan Irle6, Hiromi Nakai2,4,7,8.
Abstract
The linear-scaling divide-and-conquer (DC) quantum chemical methodology is applied to the density-functional tight-binding (DFTB) theory to develop a massively parallel program that achieves on-the-fly molecular reaction dynamics simulations of huge systems from scratch. The functions to perform large scale geometry optimization and molecular dynamics with DC-DFTB potential energy surface are implemented to the program called DC-DFTB-K. A novel interpolation-based algorithm is developed for parallelizing the determination of the Fermi level in the DC method. The performance of the DC-DFTB-K program is assessed using a laboratory computer and the K computer. Numerical tests show the high efficiency of the DC-DFTB-K program, a single-point energy gradient calculation of a one-million-atom system is completed within 60 s using 7290 nodes of the K computer.Entities:
Keywords: density-functional tight-binding method; linear-scaling divide-and-conquer method; massively parallel computation; quantum mechanical molecular dynamics
Year: 2016 PMID: 27317328 DOI: 10.1002/jcc.24419
Source DB: PubMed Journal: J Comput Chem ISSN: 0192-8651 Impact factor: 3.376