| Literature DB >> 27316321 |
Derya Vural1, Xiaohu Hu1, Benjamin Lindner2, Nitin Jain1, Yinglong Miao1, Xiaolin Cheng1, Zhuo Liu2, Liang Hong2, Jeremy C Smith3.
Abstract
Neutrons scatter quasielastically from stochastic, diffusive processes, such as overdamped vibrations, localized diffusion and transitions between energy minima. In biological systems, such as proteins and membranes, these relaxation processes are of considerable physical interest. We review here recent methodological advances and applications of quasielastic neutron scattering (QENS) in biology, concentrating on the role of molecular dynamics simulation in generating data with which neutron profiles can be unambiguously interpreted. We examine the use of massively-parallel computers in calculating scattering functions, and the application of Markov state modeling. The decomposition of MD-derived neutron dynamic susceptibilities is described, and the use of this in combination with NMR spectroscopy. We discuss dynamics at very long times, including approximations to the infinite time mean-square displacement and nonequilibrium aspects of single-protein dynamics. Finally, we examine how neutron scattering and MD can be combined to provide information on lipid nanodomains. This article is part of a Special Issue entitled "Science for Life" Guest Editor: Dr. Austen Angell, Dr. Salvatore Magazù and Dr. Federica Migliardo.Entities:
Keywords: Biomolecules; Dynamics; MD simulation; Neutron scattering
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Year: 2016 PMID: 27316321 DOI: 10.1016/j.bbagen.2016.06.015
Source DB: PubMed Journal: Biochim Biophys Acta Gen Subj ISSN: 0304-4165 Impact factor: 3.770