Literature DB >> 27316321

Quasielastic neutron scattering in biology: Theory and applications.

Derya Vural1, Xiaohu Hu1, Benjamin Lindner2, Nitin Jain1, Yinglong Miao1, Xiaolin Cheng1, Zhuo Liu2, Liang Hong2, Jeremy C Smith3.   

Abstract

Neutrons scatter quasielastically from stochastic, diffusive processes, such as overdamped vibrations, localized diffusion and transitions between energy minima. In biological systems, such as proteins and membranes, these relaxation processes are of considerable physical interest. We review here recent methodological advances and applications of quasielastic neutron scattering (QENS) in biology, concentrating on the role of molecular dynamics simulation in generating data with which neutron profiles can be unambiguously interpreted. We examine the use of massively-parallel computers in calculating scattering functions, and the application of Markov state modeling. The decomposition of MD-derived neutron dynamic susceptibilities is described, and the use of this in combination with NMR spectroscopy. We discuss dynamics at very long times, including approximations to the infinite time mean-square displacement and nonequilibrium aspects of single-protein dynamics. Finally, we examine how neutron scattering and MD can be combined to provide information on lipid nanodomains. This article is part of a Special Issue entitled "Science for Life" Guest Editor: Dr. Austen Angell, Dr. Salvatore Magazù and Dr. Federica Migliardo.
Copyright © 2016 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Biomolecules; Dynamics; MD simulation; Neutron scattering

Mesh:

Substances:

Year:  2016        PMID: 27316321     DOI: 10.1016/j.bbagen.2016.06.015

Source DB:  PubMed          Journal:  Biochim Biophys Acta Gen Subj        ISSN: 0304-4165            Impact factor:   3.770


  4 in total

1.  Determination of Dynamical Heterogeneity from Dynamic Neutron Scattering of Proteins.

Authors:  Derya Vural; Jeremy C Smith; Henry R Glyde
Journal:  Biophys J       Date:  2018-03-24       Impact factor: 4.033

Review 2.  Investigating Structure and Dynamics of Proteins in Amorphous Phases Using Neutron Scattering.

Authors:  Maria Monica Castellanos; Arnold McAuley; Joseph E Curtis
Journal:  Comput Struct Biotechnol J       Date:  2016-12-21       Impact factor: 7.271

3.  Acceleration of biomolecular kinetics in Gaussian accelerated molecular dynamics.

Authors:  Yinglong Miao
Journal:  J Chem Phys       Date:  2018-08-21       Impact factor: 3.488

4.  Role of intracellular water in the normal-to-cancer transition in human cells-insights from quasi-elastic neutron scattering.

Authors:  M P M Marques; A L M Batista de Carvalho; A P Mamede; A Dopplapudi; V García Sakai; L A E Batista de Carvalho
Journal:  Struct Dyn       Date:  2020-09-08       Impact factor: 2.920

  4 in total

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