Literature DB >> 27313978

Identification of Anthropogenic Compounds in Urban Environments and Evaluation of Automated Methods for Reading Fragmentation-A Case of River Water.

Atsushi Yamamoto1, Naoko Matsumoto2, Hideya Kawasaki2, Ryuichi Arakawa2.   

Abstract

A workflow based on liquid chromatography/high-resolution mass spectrometry (LC/HR-MS) was applied for the identification of compounds in urban environments. Substances extracted by solid-phase extraction from river water were wholly analyzed by LC/HR-MS without any purification. Fragmentation in collision-induced dissociation was manually studied for the 20 most intense ions in positive- and negative-ion electrospray ionization with accurate mass determination at a resolution of 100,000. Sixteen anthropogenic compounds in the extract were identified and confirmed using standard reference reagents. These compounds consisted of pharmaceuticals, surfactants, flame retardants, and industrial intermediates. The majority of the compounds are common in our daily life. In the identification process, two automated methods, MAGMa and MetFrag/MetFusion, for reading fragmentation were evaluated for the sixteen compounds. Although automated methods could be used to retrieve the correct molecular structures in most cases, they could not always be promoted to the top rank. Automated methods have yet to be a complete solution for identifying chemical compounds, but will considerably reduce the burden for humans in reading fragmentation.

Entities:  

Keywords:  environmental analysis; fragmentation; high-resolution mass spectrometry; urban environment

Year:  2016        PMID: 27313978      PMCID: PMC4894824          DOI: 10.5702/massspectrometry.A0045

Source DB:  PubMed          Journal:  Mass Spectrom (Tokyo)        ISSN: 2186-5116


  15 in total

1.  LC-high resolution MS in environmental analysis: from target screening to the identification of unknowns.

Authors:  Martin Krauss; Heinz Singer; Juliane Hollender
Journal:  Anal Bioanal Chem       Date:  2010-03-16       Impact factor: 4.142

2.  EU-wide monitoring survey on emerging polar organic contaminants in wastewater treatment plant effluents.

Authors:  Robert Loos; Raquel Carvalho; Diana C António; Sara Comero; Giovanni Locoro; Simona Tavazzi; Bruno Paracchini; Michela Ghiani; Teresa Lettieri; Ludek Blaha; Barbora Jarosova; Stefan Voorspoels; Kelly Servaes; Peter Haglund; Jerker Fick; Richard H Lindberg; David Schwesig; Bernd M Gawlik
Journal:  Water Res       Date:  2013-09-15       Impact factor: 11.236

3.  Identification of novel micropollutants in wastewater by a combination of suspect and nontarget screening.

Authors:  Christine Hug; Nadin Ulrich; Tobias Schulze; Werner Brack; Martin Krauss
Journal:  Environ Pollut       Date:  2013-09-06       Impact factor: 8.071

Review 4.  Accurate mass screening and identification of emerging contaminants in environmental samples by liquid chromatography-hybrid linear ion trap Orbitrap mass spectrometry.

Authors:  A C Hogenboom; J A van Leerdam; P de Voogt
Journal:  J Chromatogr A       Date:  2008-08-22       Impact factor: 4.759

5.  Substructure-based annotation of high-resolution multistage MS(n) spectral trees.

Authors:  Lars Ridder; Justin J J van der Hooft; Stefan Verhoeven; Ric C H de Vos; René van Schaik; Jacques Vervoort
Journal:  Rapid Commun Mass Spectrom       Date:  2012-10-30       Impact factor: 2.419

6.  MetFusion: integration of compound identification strategies.

Authors:  Michael Gerlich; Steffen Neumann
Journal:  J Mass Spectrom       Date:  2013-03       Impact factor: 1.982

7.  Identifying small molecules via high resolution mass spectrometry: communicating confidence.

Authors:  Emma L Schymanski; Junho Jeon; Rebekka Gulde; Kathrin Fenner; Matthias Ruff; Heinz P Singer; Juliane Hollender
Journal:  Environ Sci Technol       Date:  2014-01-29       Impact factor: 9.028

8.  Occurrence of fluoroquinolones and fluoroquinolone-resistance genes in the aquatic environment.

Authors:  Fumie Adachi; Atsushi Yamamoto; Koh-Ichi Takakura; Ryuji Kawahara
Journal:  Sci Total Environ       Date:  2013-01-03       Impact factor: 7.963

9.  In silico fragmentation for computer assisted identification of metabolite mass spectra.

Authors:  Sebastian Wolf; Stephan Schmidt; Matthias Müller-Hannemann; Steffen Neumann
Journal:  BMC Bioinformatics       Date:  2010-03-22       Impact factor: 3.169

10.  Differentiation and quantification of linear alkyl benzenesulfonate isomers by liquid chromatography-ion-trap mass spectrometry.

Authors:  Loreto Lunar; Soledad Rubio; Dolores Pérez-Bendito
Journal:  J Chromatogr A       Date:  2004-03-26       Impact factor: 4.759

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