| Literature DB >> 27310815 |
Abstract
A new uniform algorithm based on sequential removal of redundancy from inputs is proposed to solve the turnpike and beltway problems. For error-free inputs that simulate experimental data with high accuracy, the size of inputs decreases from [Formula: see text] to [Formula: see text], which permits one to eliminate exhaustive search almost completely and reconstruct sequences in [Formula: see text] steps. Computational experiments show high efficiency of the algorithm for both the turnpike and beltway cases, with the reconstruction time for sequences of lengths up to several thousand elements being within 1 second on a modern PC.Entities:
Keywords: algorithms; mass spectroscopy; sequences
Mesh:
Year: 2016 PMID: 27310815 DOI: 10.1089/cmb.2016.0046
Source DB: PubMed Journal: J Comput Biol ISSN: 1066-5277 Impact factor: 1.479