Literature DB >> 27310815

A Simple Approach to the Reconstruction of a Set of Points from the Multiset of n2 Pairwise Distances in n2 Steps for the Sequencing Problem: II. Algorithm.

Eduard Fomin1.   

Abstract

A new uniform algorithm based on sequential removal of redundancy from inputs is proposed to solve the turnpike and beltway problems. For error-free inputs that simulate experimental data with high accuracy, the size of inputs decreases from [Formula: see text] to [Formula: see text], which permits one to eliminate exhaustive search almost completely and reconstruct sequences in [Formula: see text] steps. Computational experiments show high efficiency of the algorithm for both the turnpike and beltway cases, with the reconstruction time for sequences of lengths up to several thousand elements being within 1 second on a modern PC.

Entities:  

Keywords:  algorithms; mass spectroscopy; sequences

Mesh:

Year:  2016        PMID: 27310815     DOI: 10.1089/cmb.2016.0046

Source DB:  PubMed          Journal:  J Comput Biol        ISSN: 1066-5277            Impact factor:   1.479


  1 in total

1.  Identification of Antimicrobial Peptides from Novel Lactobacillus fermentum Strain.

Authors:  Anna S Pavlova; Georgii D Ozhegov; Georgij P Arapidi; Ivan O Butenko; Eduard S Fomin; Nikolai A Alemasov; Dmitry A Afonnikov; Dina R Yarullina; Vadim T Ivanov; Vadim M Govorun; Airat R Kayumov
Journal:  Protein J       Date:  2020-02       Impact factor: 2.371

  1 in total

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