| Literature DB >> 27308040 |
Afef Guesmi1, Sofian Gatfaoui1, Thierry Roisnel2, Houda Marouani1.
Abstract
The crystal structure of the title salt {systematic name: [1,3-phenyl-enebis(methyl-ene)]bis-(aza-nium) sulfate}, C8H14N2 (2+)·SO4 (2-), consists of infinite (100) sheets of alternating organic and inorganic entities The m-xylylenediaminium cations are linked to the sulfate anions by N-H⋯O and asymmetric bifurcated N-H⋯(O,O) hydrogen bonds, generating a three-dimensional network. A weak C-H⋯O inter-action also occurs. The Hirshfeld surface analysis and the two-dimensional fingerprint maps indicate that the packing is dominated by H⋯O/O⋯H and H⋯H contacts.Entities:
Keywords: Hirshfeld surface analysis; crystal structure; fingerprint maps; hydrogen bonding; m-xylylenediaminium; sulfate
Year: 2016 PMID: 27308040 PMCID: PMC4908557 DOI: 10.1107/S2056989016006940
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1A view of (I), with displacement ellipsoids drawn at the 30% probability level. H atoms are represented as small spheres of arbitrary radii. Hydrogen bonds are shown as dotted lines.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H1 | 0.88 (2) | 1.88 (2) | 2.7271 (17) | 160.1 (19) |
| N1—H1 | 0.88 (2) | 2.54 (2) | 3.1461 (18) | 126.1 (16) |
| N1—H2 | 0.90 (3) | 1.85 (3) | 2.7191 (17) | 162 (2) |
| N1—H3 | 0.88 (3) | 2.03 (2) | 2.8264 (17) | 150 (2) |
| N1—H3 | 0.88 (3) | 2.54 (2) | 3.1733 (18) | 129.4 (18) |
| N2—H1 | 0.84 (2) | 1.97 (2) | 2.8096 (17) | 177 (2) |
| N2—H2 | 0.80 (3) | 2.26 (3) | 2.9537 (18) | 145 (2) |
| N2—H3 | 1.00 (3) | 1.92 (3) | 2.9021 (19) | 168 (3) |
| N2—H3 | 1.00 (3) | 2.52 (3) | 3.0502 (18) | 113 (2) |
| C5—H5⋯O3 | 0.93 | 2.47 | 3.3050 (17) | 150 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .
Figure 2The 12-membered ring motif (12) in (I). C atoms have been omitted for clarity.
Figure 3Projection of (I) along the b axis. H atoms not involved in hydrogen bonding have been omitted.
Figure 4Hirshfeld surface mapped over d norm showing hydrogen bonds with neighbouring sulfate groups. The surfaces are shown as transparent to allow visualization of the orientation and conformation of the functional groups. N—H⋯O and C—H⋯O hydrogen bonds are represented by red and blue dotted lines, respectively.
Figure 5Fingerprint plots of the major contacts: (a) H⋯O, (b) H⋯H, (c) C⋯H and (d) O⋯O.
Experimental details
| Crystal data | |
| Chemical formula | C8H14N2 2+·SO4 2− |
|
| 234.27 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 150 |
|
| 12.841 (1), 6.0989 (5), 15.9642 (9) |
| β (°) | 125.791 (4) |
|
| 1014.15 (13) |
|
| 4 |
| Radiation type | Mo |
| μ (mm−1) | 0.32 |
| Crystal size (mm) | 0.56 × 0.44 × 0.30 |
| Data collection | |
| Diffractometer | Bruker APEXII |
| Absorption correction | Multi-scan ( |
|
| 0.735, 0.910 |
| No. of measured, independent and observed [ | 10992, 2293, 2131 |
|
| 0.048 |
| (sin θ/λ)max (Å−1) | 0.649 |
| Refinement | |
|
| 0.038, 0.114, 1.14 |
| No. of reflections | 2293 |
| No. of parameters | 160 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.38, −0.61 |
Computer programs: APEX2 (Bruker, 2014 ▸) and SAINT (Bruker, 2014 ▸), XPREP (Sheldrick, 2015 ▸), SIR97 (Altomare et al., 1999 ▸), SHELXL2014/7 (Sheldrick, 2015 ▸) and ORTEP-3 for Windows and WinGX publication routines (Farrugia, 2012 ▸).
| C8H14N22+·SO42− | |
| Monoclinic, | Mo |
| Cell parameters from 9927 reflections | |
| θ = 3.7–27.5° | |
| µ = 0.32 mm−1 | |
| β = 125.791 (4)° | |
| Prism, colourless | |
| 0.56 × 0.44 × 0.30 mm |
| APEXII, Bruker-AXS diffractometer | 2293 independent reflections |
| Radiation source: fine-focus sealed tube | 2131 reflections with |
| Graphite monochromator | |
| CCD rotation images, thin slices scans | θmax = 27.5°, θmin = 3.2° |
| Absorption correction: multi-scan ( | |
| 10992 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2293 reflections | (Δ/σ)max = 0.001 |
| 160 parameters | Δρmax = 0.38 e Å−3 |
| 0 restraints | Δρmin = −0.61 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| S | −0.43829 (3) | −0.22666 (6) | −0.83072 (3) | 0.01170 (15) | |
| O1 | −0.57682 (10) | −0.1916 (2) | −0.88190 (9) | 0.0190 (3) | |
| O2 | −0.36751 (12) | −0.22945 (19) | −0.71797 (9) | 0.0236 (3) | |
| O3 | −0.38903 (10) | −0.04803 (18) | −0.86220 (9) | 0.0187 (3) | |
| O4 | −0.41947 (10) | −0.43848 (17) | −0.86666 (8) | 0.0155 (2) | |
| N1 | 0.29551 (12) | −0.2271 (2) | −0.79401 (10) | 0.0131 (3) | |
| C1 | 0.16854 (14) | −0.1870 (4) | −0.89148 (12) | 0.0256 (4) | |
| H1A | 0.1423 | −0.3180 | −0.9338 | 0.031* | |
| H1B | 0.1768 | −0.0699 | −0.9284 | 0.031* | |
| C2 | 0.06392 (13) | −0.1263 (3) | −0.87945 (11) | 0.0158 (3) | |
| C3 | 0.06536 (13) | 0.0745 (3) | −0.83697 (10) | 0.0161 (3) | |
| H3 | 0.1357 | 0.1674 | −0.8089 | 0.019* | |
| C4 | −0.03879 (13) | 0.1353 (2) | −0.83668 (11) | 0.0147 (3) | |
| H4 | −0.0374 | 0.2689 | −0.8080 | 0.018* | |
| C5 | −0.14527 (12) | −0.0016 (2) | −0.87887 (10) | 0.0125 (3) | |
| H5 | −0.2147 | 0.0417 | −0.8789 | 0.015* | |
| C6 | −0.14779 (13) | −0.2033 (2) | −0.92106 (11) | 0.0114 (3) | |
| C7 | −0.04235 (14) | −0.2636 (2) | −0.92037 (12) | 0.0150 (3) | |
| H7 | −0.0430 | −0.3985 | −0.9478 | 0.018* | |
| C8 | −0.25953 (13) | −0.3597 (2) | −0.96596 (12) | 0.0160 (3) | |
| H8A | −0.2567 | −0.4632 | −1.0107 | 0.019* | |
| H8B | −0.2511 | −0.4421 | −0.9103 | 0.019* | |
| N2 | −0.38513 (12) | −0.2467 (2) | −1.02553 (12) | 0.0175 (3) | |
| H1N1 | 0.3194 (19) | −0.114 (4) | −0.7518 (16) | 0.020 (5)* | |
| H2N1 | 0.350 (2) | −0.234 (3) | −0.8120 (18) | 0.027 (6)* | |
| H3N1 | 0.299 (2) | −0.352 (4) | −0.7644 (17) | 0.029 (6)* | |
| H1N2 | −0.445 (2) | −0.340 (4) | −1.0567 (16) | 0.021 (5)* | |
| H2N2 | −0.387 (2) | −0.161 (5) | −1.064 (2) | 0.039 (7)* | |
| H3N2 | −0.399 (3) | −0.172 (5) | −0.977 (2) | 0.059 (8)* |
| S | 0.0084 (2) | 0.0123 (2) | 0.0163 (2) | −0.00019 (11) | 0.00831 (17) | −0.00144 (11) |
| O1 | 0.0099 (5) | 0.0250 (6) | 0.0266 (6) | 0.0029 (4) | 0.0133 (5) | 0.0046 (5) |
| O2 | 0.0256 (6) | 0.0229 (6) | 0.0167 (6) | 0.0027 (5) | 0.0092 (5) | −0.0022 (4) |
| O3 | 0.0199 (5) | 0.0146 (5) | 0.0308 (6) | −0.0049 (4) | 0.0201 (5) | −0.0037 (4) |
| O4 | 0.0148 (5) | 0.0134 (5) | 0.0212 (5) | −0.0007 (4) | 0.0122 (4) | −0.0036 (4) |
| N1 | 0.0098 (6) | 0.0150 (6) | 0.0167 (6) | 0.0016 (4) | 0.0091 (5) | 0.0017 (5) |
| C1 | 0.0064 (6) | 0.0557 (12) | 0.0145 (7) | −0.0006 (7) | 0.0061 (6) | −0.0075 (7) |
| C2 | 0.0066 (6) | 0.0296 (8) | 0.0114 (6) | −0.0004 (5) | 0.0054 (5) | −0.0016 (6) |
| C3 | 0.0081 (6) | 0.0241 (8) | 0.0137 (6) | −0.0050 (5) | 0.0050 (5) | −0.0007 (5) |
| C4 | 0.0129 (6) | 0.0159 (7) | 0.0138 (6) | −0.0015 (5) | 0.0070 (5) | −0.0016 (5) |
| C5 | 0.0092 (6) | 0.0168 (7) | 0.0130 (6) | 0.0012 (5) | 0.0074 (5) | 0.0004 (5) |
| C6 | 0.0063 (6) | 0.0161 (7) | 0.0122 (6) | −0.0003 (5) | 0.0056 (5) | 0.0004 (5) |
| C7 | 0.0088 (6) | 0.0209 (7) | 0.0151 (7) | 0.0006 (5) | 0.0069 (6) | −0.0044 (5) |
| C8 | 0.0079 (6) | 0.0138 (7) | 0.0247 (7) | −0.0008 (5) | 0.0087 (6) | −0.0035 (6) |
| N2 | 0.0066 (6) | 0.0187 (7) | 0.0211 (7) | −0.0022 (5) | 0.0047 (5) | 0.0051 (5) |
| S—O2 | 1.4673 (12) | C3—H3 | 0.9300 |
| S—O1 | 1.4756 (10) | C4—C5 | 1.3941 (19) |
| S—O3 | 1.4871 (11) | C4—H4 | 0.9300 |
| S—O4 | 1.4895 (11) | C5—C6 | 1.393 (2) |
| N1—C1 | 1.4738 (19) | C5—H5 | 0.9300 |
| N1—H1N1 | 0.88 (2) | C6—C7 | 1.3971 (19) |
| N1—H2N1 | 0.90 (3) | C6—C8 | 1.5100 (19) |
| N1—H3N1 | 0.88 (3) | C7—H7 | 0.9300 |
| C1—C2 | 1.510 (2) | C8—N2 | 1.4787 (18) |
| C1—H1A | 0.9700 | C8—H8A | 0.9700 |
| C1—H1B | 0.9700 | C8—H8B | 0.9700 |
| C2—C3 | 1.395 (2) | N2—H1N2 | 0.84 (2) |
| C2—C7 | 1.395 (2) | N2—H2N2 | 0.80 (3) |
| C3—C4 | 1.391 (2) | N2—H3N2 | 1.00 (3) |
| O2—S—O1 | 111.24 (7) | C3—C4—C5 | 120.81 (14) |
| O2—S—O3 | 110.02 (7) | C3—C4—H4 | 119.6 |
| O1—S—O3 | 108.67 (7) | C5—C4—H4 | 119.6 |
| O2—S—O4 | 109.80 (6) | C6—C5—C4 | 120.08 (13) |
| O1—S—O4 | 109.08 (7) | C6—C5—H5 | 120.0 |
| O3—S—O4 | 107.96 (6) | C4—C5—H5 | 120.0 |
| C1—N1—H1N1 | 110.6 (13) | C5—C6—C7 | 118.71 (13) |
| C1—N1—H2N1 | 104.9 (15) | C5—C6—C8 | 122.29 (12) |
| H1N1—N1—H2N1 | 107.1 (19) | C7—C6—C8 | 119.00 (13) |
| C1—N1—H3N1 | 112.8 (15) | C2—C7—C6 | 121.56 (14) |
| H1N1—N1—H3N1 | 112 (2) | C2—C7—H7 | 119.2 |
| H2N1—N1—H3N1 | 109 (2) | C6—C7—H7 | 119.2 |
| N1—C1—C2 | 115.06 (13) | N2—C8—C6 | 112.76 (12) |
| N1—C1—H1A | 108.5 | N2—C8—H8A | 109.0 |
| C2—C1—H1A | 108.5 | C6—C8—H8A | 109.0 |
| N1—C1—H1B | 108.5 | N2—C8—H8B | 109.0 |
| C2—C1—H1B | 108.5 | C6—C8—H8B | 109.0 |
| H1A—C1—H1B | 107.5 | H8A—C8—H8B | 107.8 |
| C3—C2—C7 | 119.07 (13) | C8—N2—H1N2 | 109.8 (15) |
| C3—C2—C1 | 121.14 (14) | C8—N2—H2N2 | 108.8 (18) |
| C7—C2—C1 | 119.50 (15) | H1N2—N2—H2N2 | 112 (2) |
| C4—C3—C2 | 119.76 (13) | C8—N2—H3N2 | 109.3 (18) |
| C4—C3—H3 | 120.1 | H1N2—N2—H3N2 | 105 (2) |
| C2—C3—H3 | 120.1 | H2N2—N2—H3N2 | 112 (3) |
| H··· | ||||
| N1—H1 | 0.88 (2) | 1.88 (2) | 2.7271 (17) | 160.1 (19) |
| N1—H1 | 0.88 (2) | 2.54 (2) | 3.1461 (18) | 126.1 (16) |
| N1—H2 | 0.90 (3) | 1.85 (3) | 2.7191 (17) | 162 (2) |
| N1—H3 | 0.88 (3) | 2.03 (2) | 2.8264 (17) | 150 (2) |
| N1—H3 | 0.88 (3) | 2.54 (2) | 3.1733 (18) | 129.4 (18) |
| N2—H1 | 0.84 (2) | 1.97 (2) | 2.8096 (17) | 177 (2) |
| N2—H2 | 0.80 (3) | 2.26 (3) | 2.9537 (18) | 145 (2) |
| N2—H3 | 1.00 (3) | 1.92 (3) | 2.9021 (19) | 168 (3) |
| N2—H3 | 1.00 (3) | 2.52 (3) | 3.0502 (18) | 113 (2) |
| C5—H5···O3 | 0.93 | 2.47 | 3.3050 (17) | 150 |