| Literature DB >> 27308018 |
Bastian Tewes1, Bastian Frehland1, Roland Fröhlich2, Bernhard Wünsch3.
Abstract
In the title compound, C25H27NO4S, which crystallized as a racemate, the relative configuration of the adjacent OH and CH3 groups on the azepine ring is trans. The seven-membered azepin ring has a chair-like conformation. The planar aromatic rings of the benzyl and tosyl-ate moiety are inclined to the planar 3-benzazepine ring by 78.39 (15) and 77.03 (14)°, respectively, and to each another by 13.82 (15)°. In the crystal, mol-ecules are linked via O-H⋯O and C-H⋯O hydrogen bonds, forming double-stranded chains along the a-axis direction. The chains are linked via C-H⋯π inter-actions, forming a three-dimensional architecture.Entities:
Keywords: GluN2B antagonists; NMDA receptor antagonists; conformational restriction; crystal structure; hydrogen bonding; ifenprodil analogs; relative configuration; tetrahydro-3-benzazepines
Year: 2016 PMID: 27308018 PMCID: PMC4908544 DOI: 10.1107/S2056989016005855
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1Synthesis of GluN2B antagonists including the lead compound ifenprodil and the target compound (S,R)-4. Reagents and reaction conditions: (a) NaBH4, CH3OH, (S,R)-2 50%, (R,R)-3 23%.
Figure 2The molecular structure of the title compound (1S,2R)-2 with atom labelling. Displacement ellipsoids are drawn at the 30% probability level.
Hydrogen-bond geometry (Å, °)
Cg1, Cg2 and Cg3 are the centroids of rings C6–C11, C16–C21 and C25–C30, respectively.
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O12—H12⋯O23i | 0.83 | 2.22 | 3.034 (3) | 169 |
| C2—H2⋯O24ii | 0.99 | 2.52 | 3.265 (3) | 132 |
| C18—H18⋯ | 0.94 | 2.89 | 3.738 (4) | 150 |
| C20—H20⋯ | 0.94 | 2.83 | 3.631 (3) | 144 |
| C29—H29⋯ | 0.94 | 2.76 | 3.545 (3) | 142 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .
Figure 3A view along the a axis of the crystal packing of the title compound (1S,2R)-2. The hydrogen bonds are shown as dashed lines (see Table 1 ▸); for clarity, H atoms not involved in these interactions are omitted.
Experimental details
| Crystal data | |
| Chemical formula | C25H27NO4S |
|
| 437.54 |
| Crystal system, space group | Orthorhombic, |
| Temperature (K) | 223 |
|
| 7.5071 (2), 23.6113 (8), 24.5180 (8) |
|
| 4345.9 (2) |
|
| 8 |
| Radiation type | Cu |
| μ (mm−1) | 1.59 |
| Crystal size (mm) | 0.25 × 0.15 × 0.08 |
| Data collection | |
| Diffractometer | Nonius KappaCCD APEXII |
| Absorption correction | Multi-scan ( |
|
| 0.692, 0.884 |
| No. of measured, independent and observed [ | 40664, 3874, 3543 |
|
| 0.064 |
| (sin θ/λ)max (Å−1) | 0.600 |
| Refinement | |
|
| 0.058, 0.151, 1.10 |
| No. of reflections | 3874 |
| No. of parameters | 283 |
| H-atom treatment | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.64, −0.27 |
Computer programs: COLLECT (Nonius, 1998 ▸), DENZO–SMN (Otwinowski & Minor, 1997 ▸), SHELXS97, SHELXL97 and XP in SHELXTL (Sheldrick, 2008 ▸), Mercury (Macrae et al., 2008 ▸) and PLATON (Spek, 2009 ▸).
| C25H27NO4S | |
| Orthorhombic, | Cu |
| Hall symbol: -P 2ac 2ab | Cell parameters from 5365 reflections |
| θ = 0.9–68.3° | |
| µ = 1.59 mm−1 | |
| Plate, colourless | |
| 0.25 × 0.15 × 0.08 mm |
| Nonius KappaCCD APEXII diffractometer | 3874 independent reflections |
| Radiation source: fine-focus sealed tube | 3543 reflections with |
| Graphite monochromator | |
| ω and φ scans | θmax = 67.7°, θmin = 4.2° |
| Absorption correction: multi-scan ( | |
| 40664 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 3874 reflections | (Δ/σ)max = 0.001 |
| 283 parameters | Δρmax = 0.64 e Å−3 |
| 0 restraints | Δρmin = −0.27 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| C1 | −0.2632 (4) | 0.25588 (13) | 0.33843 (12) | 0.0433 (7) | |
| H1 | −0.3327 | 0.2614 | 0.3045 | 0.052* | |
| C2 | −0.0688 (4) | 0.26290 (13) | 0.32342 (11) | 0.0444 (7) | |
| H2 | −0.0462 | 0.2383 | 0.2914 | 0.053* | |
| N3 | 0.0518 (3) | 0.24359 (10) | 0.36757 (9) | 0.0382 (5) | |
| C4 | 0.0510 (4) | 0.27343 (13) | 0.42068 (11) | 0.0448 (7) | |
| H4A | 0.0656 | 0.3141 | 0.4142 | 0.054* | |
| H4B | 0.1530 | 0.2605 | 0.4423 | 0.054* | |
| C5 | −0.1175 (4) | 0.26389 (14) | 0.45294 (11) | 0.0480 (7) | |
| H5A | −0.0934 | 0.2721 | 0.4914 | 0.058* | |
| H5B | −0.1504 | 0.2238 | 0.4502 | 0.058* | |
| C6 | −0.2745 (4) | 0.29959 (12) | 0.43450 (11) | 0.0408 (6) | |
| C7 | −0.3588 (4) | 0.33478 (12) | 0.47111 (11) | 0.0403 (6) | |
| H7 | −0.3162 | 0.3369 | 0.5071 | 0.048* | |
| C8 | −0.5061 (4) | 0.36736 (11) | 0.45600 (10) | 0.0360 (6) | |
| C9 | −0.5624 (4) | 0.36714 (11) | 0.40220 (11) | 0.0384 (6) | |
| H9 | −0.6574 | 0.3902 | 0.3909 | 0.046* | |
| C10 | −0.4758 (4) | 0.33218 (12) | 0.36548 (11) | 0.0415 (7) | |
| H10 | −0.5136 | 0.3322 | 0.3289 | 0.050* | |
| C11 | −0.3365 (4) | 0.29737 (12) | 0.38014 (11) | 0.0411 (6) | |
| O12 | −0.2846 (3) | 0.19835 (9) | 0.35386 (10) | 0.0508 (6) | |
| H12 | −0.3873 | 0.1933 | 0.3655 | 0.076* | |
| C13 | −0.0263 (5) | 0.32466 (13) | 0.30574 (13) | 0.0515 (8) | |
| H13A | −0.0412 | 0.3498 | 0.3367 | 0.077* | |
| H13B | −0.1067 | 0.3359 | 0.2767 | 0.077* | |
| H13C | 0.0956 | 0.3268 | 0.2928 | 0.077* | |
| O14 | −0.5837 (3) | 0.39821 (8) | 0.49686 (7) | 0.0425 (5) | |
| C15 | −0.7379 (4) | 0.43106 (13) | 0.48158 (12) | 0.0459 (7) | |
| H15A | −0.8273 | 0.4065 | 0.4646 | 0.055* | |
| H15B | −0.7039 | 0.4603 | 0.4551 | 0.055* | |
| C16 | −0.8140 (4) | 0.45824 (12) | 0.53175 (11) | 0.0393 (6) | |
| C17 | −0.9211 (4) | 0.42782 (14) | 0.56697 (13) | 0.0520 (8) | |
| H17 | −0.9428 | 0.3892 | 0.5605 | 0.062* | |
| C18 | −0.9964 (5) | 0.45419 (17) | 0.61180 (14) | 0.0611 (9) | |
| H18 | −1.0692 | 0.4334 | 0.6357 | 0.073* | |
| C19 | −0.9651 (5) | 0.51087 (16) | 0.62151 (13) | 0.0582 (9) | |
| H19 | −1.0168 | 0.5287 | 0.6519 | 0.070* | |
| C20 | −0.8587 (4) | 0.54114 (13) | 0.58683 (12) | 0.0499 (8) | |
| H20 | −0.8368 | 0.5797 | 0.5936 | 0.060* | |
| C21 | −0.7835 (4) | 0.51513 (12) | 0.54197 (12) | 0.0424 (7) | |
| H21 | −0.7110 | 0.5362 | 0.5182 | 0.051* | |
| S22 | 0.22307 (9) | 0.20715 (3) | 0.34775 (3) | 0.0364 (2) | |
| O23 | 0.3341 (2) | 0.19811 (9) | 0.39487 (8) | 0.0422 (5) | |
| O24 | 0.3039 (3) | 0.23240 (9) | 0.30048 (8) | 0.0447 (5) | |
| C26 | 0.1770 (4) | 0.12036 (12) | 0.27553 (12) | 0.0431 (7) | |
| H26 | 0.2349 | 0.1434 | 0.2498 | 0.052* | |
| C27 | 0.1279 (4) | 0.06527 (13) | 0.26233 (12) | 0.0483 (7) | |
| H27 | 0.1544 | 0.0511 | 0.2274 | 0.058* | |
| C28 | 0.0412 (4) | 0.03100 (13) | 0.29945 (12) | 0.0476 (7) | |
| C31 | −0.0091 (6) | −0.02894 (14) | 0.28515 (16) | 0.0657 (10) | |
| H31A | −0.0590 | −0.0299 | 0.2487 | 0.099* | |
| H31B | −0.0968 | −0.0427 | 0.3110 | 0.099* | |
| H31C | 0.0960 | −0.0528 | 0.2866 | 0.099* | |
| C29 | 0.0012 (4) | 0.05326 (14) | 0.35077 (12) | 0.0512 (8) | |
| H29 | −0.0591 | 0.0306 | 0.3763 | 0.061* | |
| C30 | 0.0483 (4) | 0.10756 (14) | 0.36461 (12) | 0.0467 (7) | |
| H30 | 0.0193 | 0.1222 | 0.3992 | 0.056* | |
| C25 | 0.1392 (3) | 0.14065 (12) | 0.32714 (11) | 0.0373 (6) |
| C1 | 0.0446 (16) | 0.0458 (16) | 0.0396 (14) | 0.0026 (13) | −0.0051 (13) | −0.0044 (12) |
| C2 | 0.0442 (16) | 0.0598 (18) | 0.0294 (13) | 0.0093 (14) | −0.0050 (12) | −0.0057 (12) |
| N3 | 0.0338 (11) | 0.0522 (14) | 0.0287 (11) | 0.0052 (10) | −0.0015 (9) | −0.0057 (10) |
| C4 | 0.0424 (16) | 0.0570 (18) | 0.0349 (14) | 0.0026 (14) | −0.0042 (12) | −0.0040 (13) |
| C5 | 0.0465 (17) | 0.065 (2) | 0.0320 (14) | 0.0151 (15) | 0.0018 (13) | 0.0027 (13) |
| C6 | 0.0420 (15) | 0.0484 (16) | 0.0322 (14) | 0.0081 (13) | −0.0002 (12) | −0.0002 (12) |
| C7 | 0.0445 (16) | 0.0467 (15) | 0.0295 (13) | 0.0076 (13) | −0.0026 (12) | 0.0003 (11) |
| C8 | 0.0392 (14) | 0.0344 (13) | 0.0345 (13) | 0.0005 (12) | 0.0011 (11) | −0.0008 (10) |
| C9 | 0.0397 (15) | 0.0369 (14) | 0.0387 (14) | 0.0057 (12) | −0.0057 (12) | 0.0002 (11) |
| C10 | 0.0465 (16) | 0.0453 (16) | 0.0328 (13) | 0.0080 (13) | −0.0084 (12) | −0.0028 (11) |
| C11 | 0.0399 (15) | 0.0465 (16) | 0.0368 (14) | 0.0039 (13) | −0.0019 (12) | −0.0005 (12) |
| O12 | 0.0405 (12) | 0.0410 (11) | 0.0709 (15) | −0.0013 (9) | −0.0018 (11) | −0.0050 (10) |
| C13 | 0.0531 (18) | 0.0531 (18) | 0.0483 (17) | 0.0045 (15) | 0.0078 (15) | 0.0148 (14) |
| O14 | 0.0424 (11) | 0.0503 (11) | 0.0346 (10) | 0.0144 (9) | −0.0010 (8) | −0.0037 (8) |
| C15 | 0.0469 (16) | 0.0475 (16) | 0.0432 (15) | 0.0129 (14) | −0.0060 (13) | −0.0047 (13) |
| C16 | 0.0356 (14) | 0.0421 (15) | 0.0401 (14) | 0.0084 (12) | −0.0039 (12) | −0.0004 (12) |
| C17 | 0.0545 (19) | 0.0481 (17) | 0.0533 (18) | −0.0031 (15) | −0.0016 (15) | 0.0022 (14) |
| C18 | 0.0516 (19) | 0.082 (3) | 0.0494 (19) | −0.0063 (18) | 0.0107 (15) | 0.0127 (17) |
| C19 | 0.0538 (19) | 0.078 (2) | 0.0425 (17) | 0.0188 (18) | 0.0036 (15) | −0.0082 (16) |
| C20 | 0.0566 (19) | 0.0456 (17) | 0.0473 (17) | 0.0131 (15) | −0.0035 (15) | −0.0065 (13) |
| C21 | 0.0411 (16) | 0.0430 (15) | 0.0432 (15) | 0.0047 (13) | 0.0000 (12) | 0.0006 (12) |
| S22 | 0.0295 (3) | 0.0466 (4) | 0.0330 (3) | 0.0008 (3) | 0.0022 (3) | −0.0022 (3) |
| O23 | 0.0300 (9) | 0.0565 (12) | 0.0401 (10) | 0.0032 (9) | −0.0036 (8) | −0.0038 (9) |
| O24 | 0.0428 (11) | 0.0533 (12) | 0.0379 (10) | −0.0057 (9) | 0.0086 (9) | −0.0006 (9) |
| C26 | 0.0448 (16) | 0.0470 (16) | 0.0374 (14) | −0.0002 (13) | 0.0059 (12) | 0.0012 (12) |
| C27 | 0.0576 (19) | 0.0493 (17) | 0.0380 (16) | 0.0012 (15) | 0.0049 (14) | −0.0051 (13) |
| C28 | 0.0494 (17) | 0.0473 (16) | 0.0461 (16) | −0.0006 (14) | −0.0014 (14) | −0.0003 (13) |
| C31 | 0.084 (3) | 0.0484 (19) | 0.065 (2) | −0.0099 (18) | 0.003 (2) | −0.0034 (16) |
| C29 | 0.0523 (19) | 0.0571 (19) | 0.0443 (17) | −0.0119 (16) | 0.0052 (14) | 0.0047 (14) |
| C30 | 0.0468 (17) | 0.0580 (18) | 0.0354 (14) | −0.0075 (14) | 0.0084 (13) | −0.0043 (13) |
| C25 | 0.0313 (13) | 0.0460 (15) | 0.0347 (13) | 0.0014 (12) | 0.0012 (11) | −0.0004 (12) |
| C1—O12 | 1.419 (4) | C15—C16 | 1.500 (4) |
| C1—C2 | 1.514 (4) | C16—C17 | 1.381 (4) |
| C1—C11 | 1.519 (4) | C16—C21 | 1.386 (4) |
| C2—N3 | 1.483 (3) | C17—C18 | 1.384 (5) |
| C2—C13 | 1.554 (4) | C18—C19 | 1.379 (5) |
| N3—C4 | 1.480 (3) | C19—C20 | 1.368 (5) |
| N3—S22 | 1.622 (2) | C20—C21 | 1.380 (4) |
| C4—C5 | 1.509 (4) | S22—O24 | 1.438 (2) |
| C5—C6 | 1.518 (4) | S22—O23 | 1.441 (2) |
| C6—C7 | 1.377 (4) | S22—C25 | 1.765 (3) |
| C6—C11 | 1.413 (4) | C26—C25 | 1.382 (4) |
| C7—C8 | 1.397 (4) | C26—C27 | 1.390 (4) |
| C8—O14 | 1.369 (3) | C27—C28 | 1.381 (4) |
| C8—C9 | 1.385 (4) | C28—C29 | 1.396 (4) |
| C9—C10 | 1.384 (4) | C28—C31 | 1.506 (4) |
| C10—C11 | 1.377 (4) | C29—C30 | 1.373 (4) |
| O14—C15 | 1.443 (3) | C30—C25 | 1.386 (4) |
| O12—C1—C2 | 106.2 (2) | C17—C16—C21 | 119.2 (3) |
| O12—C1—C11 | 113.4 (2) | C17—C16—C15 | 120.8 (3) |
| C2—C1—C11 | 116.3 (3) | C21—C16—C15 | 120.0 (3) |
| N3—C2—C1 | 112.2 (2) | C16—C17—C18 | 120.0 (3) |
| N3—C2—C13 | 111.5 (2) | C19—C18—C17 | 120.2 (3) |
| C1—C2—C13 | 111.6 (3) | C20—C19—C18 | 120.0 (3) |
| C4—N3—C2 | 119.5 (2) | C19—C20—C21 | 120.1 (3) |
| C4—N3—S22 | 121.29 (18) | C20—C21—C16 | 120.5 (3) |
| C2—N3—S22 | 115.37 (17) | O24—S22—O23 | 117.62 (12) |
| N3—C4—C5 | 113.2 (2) | O24—S22—N3 | 110.87 (12) |
| C4—C5—C6 | 114.3 (2) | O23—S22—N3 | 107.28 (11) |
| C7—C6—C11 | 119.1 (3) | O24—S22—C25 | 106.78 (12) |
| C7—C6—C5 | 119.9 (2) | O23—S22—C25 | 107.70 (12) |
| C11—C6—C5 | 121.1 (2) | N3—S22—C25 | 105.96 (13) |
| C6—C7—C8 | 121.5 (2) | C25—C26—C27 | 118.9 (3) |
| O14—C8—C9 | 124.7 (2) | C28—C27—C26 | 121.3 (3) |
| O14—C8—C7 | 115.8 (2) | C27—C28—C29 | 118.3 (3) |
| C9—C8—C7 | 119.5 (2) | C27—C28—C31 | 121.0 (3) |
| C10—C9—C8 | 118.6 (3) | C29—C28—C31 | 120.6 (3) |
| C11—C10—C9 | 122.9 (3) | C30—C29—C28 | 121.3 (3) |
| C10—C11—C6 | 118.3 (3) | C29—C30—C25 | 119.3 (3) |
| C10—C11—C1 | 119.0 (3) | C26—C25—C30 | 120.8 (3) |
| C6—C11—C1 | 122.6 (3) | C26—C25—S22 | 119.8 (2) |
| C8—O14—C15 | 116.0 (2) | C30—C25—S22 | 119.2 (2) |
| O14—C15—C16 | 108.8 (2) | ||
| O12—C1—C2—N3 | −53.8 (3) | O14—C15—C16—C17 | −80.1 (3) |
| C11—C1—C2—N3 | 73.3 (3) | O14—C15—C16—C21 | 102.7 (3) |
| O12—C1—C2—C13 | −179.8 (2) | C21—C16—C17—C18 | 0.0 (5) |
| C11—C1—C2—C13 | −52.6 (3) | C15—C16—C17—C18 | −177.2 (3) |
| C1—C2—N3—C4 | −64.1 (3) | C16—C17—C18—C19 | 0.0 (5) |
| C13—C2—N3—C4 | 61.9 (3) | C17—C18—C19—C20 | −0.2 (5) |
| C1—C2—N3—S22 | 137.5 (2) | C18—C19—C20—C21 | 0.3 (5) |
| C13—C2—N3—S22 | −96.4 (3) | C19—C20—C21—C16 | −0.3 (5) |
| C2—N3—C4—C5 | 69.7 (3) | C17—C16—C21—C20 | 0.1 (4) |
| S22—N3—C4—C5 | −133.3 (2) | C15—C16—C21—C20 | 177.4 (3) |
| N3—C4—C5—C6 | −79.2 (3) | C4—N3—S22—O24 | −114.3 (2) |
| C4—C5—C6—C7 | −123.1 (3) | C2—N3—S22—O24 | 43.7 (2) |
| C4—C5—C6—C11 | 56.9 (4) | C4—N3—S22—O23 | 15.4 (3) |
| C11—C6—C7—C8 | 1.3 (4) | C2—N3—S22—O23 | 173.3 (2) |
| C5—C6—C7—C8 | −178.6 (3) | C4—N3—S22—C25 | 130.2 (2) |
| C6—C7—C8—O14 | 176.6 (3) | C2—N3—S22—C25 | −71.8 (2) |
| C6—C7—C8—C9 | −4.1 (4) | C25—C26—C27—C28 | 0.7 (5) |
| O14—C8—C9—C10 | −177.5 (3) | C26—C27—C28—C29 | 0.8 (5) |
| C7—C8—C9—C10 | 3.2 (4) | C26—C27—C28—C31 | −179.1 (3) |
| C8—C9—C10—C11 | 0.3 (5) | C27—C28—C29—C30 | −0.8 (5) |
| C9—C10—C11—C6 | −3.1 (5) | C31—C28—C29—C30 | 179.1 (3) |
| C9—C10—C11—C1 | 173.4 (3) | C28—C29—C30—C25 | −0.8 (5) |
| C7—C6—C11—C10 | 2.2 (4) | C27—C26—C25—C30 | −2.3 (4) |
| C5—C6—C11—C10 | −177.9 (3) | C27—C26—C25—S22 | 172.5 (2) |
| C7—C6—C11—C1 | −174.1 (3) | C29—C30—C25—C26 | 2.4 (5) |
| C5—C6—C11—C1 | 5.8 (5) | C29—C30—C25—S22 | −172.4 (2) |
| O12—C1—C11—C10 | −116.8 (3) | O24—S22—C25—C26 | 7.2 (3) |
| C2—C1—C11—C10 | 119.7 (3) | O23—S22—C25—C26 | −120.0 (2) |
| O12—C1—C11—C6 | 59.5 (4) | N3—S22—C25—C26 | 125.5 (2) |
| C2—C1—C11—C6 | −64.0 (4) | O24—S22—C25—C30 | −177.9 (2) |
| C9—C8—O14—C15 | 1.8 (4) | O23—S22—C25—C30 | 54.9 (3) |
| C7—C8—O14—C15 | −178.9 (2) | N3—S22—C25—C30 | −59.7 (3) |
| C8—O14—C15—C16 | 175.5 (2) |
| H··· | ||||
| O12—H12···O23i | 0.83 | 2.22 | 3.034 (3) | 169 |
| C2—H2···O24ii | 0.99 | 2.52 | 3.265 (3) | 132 |
| C18—H18··· | 0.94 | 2.89 | 3.738 (4) | 150 |
| C20—H20··· | 0.94 | 2.83 | 3.631 (3) | 144 |
| C29—H29··· | 0.94 | 2.76 | 3.545 (3) | 142 |