| Literature DB >> 27308005 |
Alan H Haines1, David L Hughes1.
Abstract
The title compound, Na(+)·C5H11O8S(-) [systematic name: sodium (1S,2S,3S,4R)-1,2,3,4,5-penta-hydroxy-pentane-1-sulfonate], is formed by reaction of d-lyxose with sodium bis-ulfite (sodium hydrogen sulfite) in water. The anion has an open-chain structure in which one of the oxygen atoms of the sulfonate residue, the S atom, the C atoms of the sugar chain and the O atom of the hy-droxy-methyl group form an essentially planar zigzag chain with the corresponding torsion angles lying between 179.80 (11) and 167.74 (14)°. A three-dimensional bonding network exists in the crystal structure involving hexa-coordination of sodium ions by O atoms, three of which are provided by a single d-lyxose-sulfonate unit and the other three by two sulfonate groups and one hy-droxy-methyl group, each from separate units of the adduct. Extensive inter-molecular O-H⋯O hydrogen bonding supplements this bonding network.Entities:
Keywords: crystal structure; d-lyxose bisulfite adduct; sodium hydrogen sulfite; sodium metabisulfite
Year: 2016 PMID: 27308005 PMCID: PMC4908541 DOI: 10.1107/S2056989016005375
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1Schematic representation of the preparation of the title compound.
Figure 2View of the d-lyxose–NaHSO3 adduct, indicating the atom-numbering scheme, all sodium coordination contacts and hydrogen bonds involving the atoms of the basic adduct moieties. Displacement ellipsoids are drawn at the 50% probability level. [Symmetry codes: (1) x, y, z − 1; (2) x, y + 1, z; (3) x − 1, y + 1, z; (4) x, y − 1, z; (5) x + 1, y − 1, z; (6) x, y, z + 1; (7) x − 1, y, z + 1; (8) x − 1, y, z; (9) x + 1, y, z.]
Figure 3View approximately along the d-lyxose chain, showing the intermolecular hydrogen bonding and coordination links. Symmetry codes are as in Fig. 2 ▸.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C5—H5 | 0.97 (4) | 2.48 (3) | 3.394 (2) | 157 (3) |
| O1—H1 | 0.74 (4) | 2.00 (4) | 2.6813 (19) | 152 (4) |
| O2—H2 | 0.88 (4) | 1.97 (4) | 2.8311 (19) | 164 (3) |
| O3—H3 | 0.87 (3) | 1.79 (3) | 2.664 (2) | 173 (3) |
| O4—H4 | 0.86 (4) | 2.11 (4) | 2.936 (2) | 162 (4) |
| O5—H5 | 0.80 (5) | 1.99 (5) | 2.782 (2) | 166 (5) |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .
Figure 4View approximately onto the ab plane, showing the links between the sodium ions parallel to that plane. Symmetry codes are as in Fig. 2 ▸.
Experimental details
| Crystal data | |
| Chemical formula | Na+·C5H11O8S− |
|
| 254.19 |
| Crystal system, space group | Triclinic, |
| Temperature (K) | 140 |
|
| 4.8558 (7), 5.8496 (10), 8.7950 (13) |
| α, β, γ (°) | 76.517 (13), 81.528 (12), 71.392 (14) |
|
| 229.51 (7) |
|
| 1 |
| Radiation type | Mo |
| μ (mm−1) | 0.42 |
| Crystal size (mm) | 0.37 × 0.22 × 0.15 |
| Data collection | |
| Diffractometer | Oxford Diffraction Xcalibur 3/Sapphire3 CCD |
| Absorption correction | Multi-scan ( |
|
| 0.608, 1.000 |
| No. of measured, independent and observed [ | 4256, 2668, 2637 |
|
| 0.031 |
| (sin θ/λ)max (Å−1) | 0.703 |
| Refinement | |
|
| 0.023, 0.059, 1.09 |
| No. of reflections | 2668 |
| No. of parameters | 178 |
| No. of restraints | 3 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.25, −0.45 |
| Absolute structure | Flack |
| Absolute structure parameter | 0.03 (3) |
Computer programs: CrysAlis PRO (Agilent, 2014 ▸), SHELXS97 (Sheldrick, 2008 ▸), SHELXL2014 (Sheldrick, 2015 ▸), ORTEPII (Johnson, 1976 ▸) and ORTEP-3 for Windows and WinGX (Farrugia, 2012 ▸).
| Na+·C5H11O8S− | |
| Triclinic, | |
| Mo | |
| Cell parameters from 3183 reflections | |
| θ = 4.0–32.9° | |
| α = 76.517 (13)° | µ = 0.42 mm−1 |
| β = 81.528 (12)° | |
| γ = 71.392 (14)° | Block, colourless |
| 0.37 × 0.22 × 0.15 mm |
| Oxford Diffraction Xcalibur 3/Sapphire3 CCD diffractometer | 2668 independent reflections |
| Radiation source: Enhance (Mo) X-ray Source | 2637 reflections with |
| Graphite monochromator | |
| Detector resolution: 16.0050 pixels mm-1 | θmax = 30.0°, θmin = 3.8° |
| Thin–slice φ and ω scans | |
| Absorption correction: multi-scan ( | |
| 4256 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: difference Fourier map |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max = 0.001 | |
| 2668 reflections | Δρmax = 0.25 e Å−3 |
| 178 parameters | Δρmin = −0.45 e Å−3 |
| 3 restraints | Absolute structure: Flack |
| Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.03 (3) |
| Experimental. Absorption correction: CrysAlisPro (Agilent 2014). Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm. |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Na | 0.14247 (15) | 0.62758 (13) | 0.42059 (8) | 0.00942 (15) | |
| S1 | 0.47392 (5) | 0.02789 (4) | 0.47548 (4) | 0.00670 (10) | |
| O11 | 0.5597 (3) | 0.2447 (2) | 0.39414 (15) | 0.0105 (2) | |
| O12 | 0.7080 (3) | −0.1631 (3) | 0.55456 (16) | 0.0152 (3) | |
| O13 | 0.3305 (3) | −0.0520 (3) | 0.37321 (16) | 0.0132 (3) | |
| C1 | 0.1957 (3) | 0.1206 (3) | 0.62783 (19) | 0.0074 (3) | |
| C2 | 0.2966 (4) | 0.2336 (3) | 0.7408 (2) | 0.0080 (3) | |
| C3 | 0.0562 (4) | 0.3094 (3) | 0.86872 (19) | 0.0080 (3) | |
| C4 | 0.1694 (4) | 0.4162 (3) | 0.9803 (2) | 0.0098 (3) | |
| C5 | −0.0682 (4) | 0.5331 (4) | 1.0947 (2) | 0.0133 (3) | |
| O1 | −0.0431 (3) | 0.2976 (2) | 0.55444 (15) | 0.0090 (2) | |
| O2 | 0.3613 (3) | 0.4537 (2) | 0.66271 (15) | 0.0093 (2) | |
| O3 | −0.0376 (3) | 0.1035 (3) | 0.94619 (16) | 0.0123 (3) | |
| O4 | 0.4056 (3) | 0.2355 (3) | 1.05675 (17) | 0.0154 (3) | |
| O5 | 0.0303 (4) | 0.6739 (3) | 1.17348 (17) | 0.0163 (3) | |
| H1 | 0.158 (6) | −0.022 (5) | 0.679 (3) | 0.010* | |
| H2 | 0.450 (6) | 0.117 (5) | 0.794 (3) | 0.010 (6)* | |
| H3 | −0.096 (6) | 0.433 (5) | 0.816 (3) | 0.010* | |
| H4 | 0.246 (6) | 0.548 (5) | 0.919 (3) | 0.007 (5)* | |
| H5A | −0.236 (6) | 0.632 (5) | 1.037 (4) | 0.013 (7)* | |
| H5B | −0.133 (7) | 0.409 (6) | 1.171 (4) | 0.021 (7)* | |
| H1O | −0.107 (8) | 0.248 (6) | 0.503 (4) | 0.023 (7)* | |
| H2O | 0.552 (8) | 0.420 (7) | 0.642 (4) | 0.032 (9)* | |
| H3O | −0.219 (7) | 0.158 (6) | 0.982 (3) | 0.019 (7)* | |
| H4O | 0.345 (9) | 0.159 (8) | 1.144 (5) | 0.034 (9)* | |
| H5O | 0.035 (10) | 0.799 (9) | 1.113 (6) | 0.055 (13)* |
| Na | 0.0114 (3) | 0.0081 (3) | 0.0094 (3) | −0.0030 (2) | −0.0021 (2) | −0.0021 (2) |
| S1 | 0.00646 (16) | 0.00679 (16) | 0.00738 (16) | −0.00169 (12) | −0.00029 (12) | −0.00294 (11) |
| O11 | 0.0130 (6) | 0.0106 (6) | 0.0095 (5) | −0.0065 (4) | 0.0013 (4) | −0.0021 (4) |
| O12 | 0.0110 (6) | 0.0144 (6) | 0.0138 (6) | 0.0048 (5) | −0.0017 (5) | −0.0021 (5) |
| O13 | 0.0161 (6) | 0.0170 (6) | 0.0123 (6) | −0.0098 (5) | 0.0009 (5) | −0.0083 (5) |
| C1 | 0.0065 (7) | 0.0075 (7) | 0.0082 (7) | −0.0017 (5) | 0.0005 (5) | −0.0025 (5) |
| C2 | 0.0074 (6) | 0.0093 (7) | 0.0074 (7) | −0.0020 (5) | −0.0009 (5) | −0.0021 (5) |
| C3 | 0.0076 (6) | 0.0090 (7) | 0.0069 (7) | −0.0020 (6) | −0.0001 (5) | −0.0018 (5) |
| C4 | 0.0098 (7) | 0.0135 (8) | 0.0068 (7) | −0.0042 (6) | −0.0006 (5) | −0.0025 (6) |
| C5 | 0.0147 (8) | 0.0166 (8) | 0.0099 (7) | −0.0043 (6) | 0.0009 (6) | −0.0069 (6) |
| O1 | 0.0063 (5) | 0.0103 (6) | 0.0116 (6) | −0.0013 (4) | −0.0036 (4) | −0.0045 (4) |
| O2 | 0.0094 (5) | 0.0113 (6) | 0.0090 (5) | −0.0054 (4) | 0.0012 (4) | −0.0035 (4) |
| O3 | 0.0115 (6) | 0.0111 (6) | 0.0139 (6) | −0.0051 (5) | 0.0029 (5) | −0.0017 (4) |
| O4 | 0.0091 (5) | 0.0267 (7) | 0.0081 (6) | −0.0025 (5) | −0.0021 (4) | −0.0020 (5) |
| O5 | 0.0276 (7) | 0.0142 (7) | 0.0093 (6) | −0.0067 (6) | −0.0040 (5) | −0.0041 (5) |
| Na—O5i | 2.2524 (16) | C1—H1 | 0.91 (3) |
| Na—O13ii | 2.2661 (16) | C2—O2 | 1.417 (2) |
| Na—O12iii | 2.3728 (15) | C2—C3 | 1.530 (2) |
| Na—O1 | 2.3791 (16) | C2—H2 | 0.93 (3) |
| Na—O2 | 2.3800 (15) | C3—O3 | 1.4136 (19) |
| Na—O11 | 2.5265 (16) | C3—C4 | 1.523 (2) |
| Na—C1 | 3.0515 (19) | C3—H3 | 0.94 (3) |
| Na—S1 | 3.3114 (10) | C4—O4 | 1.417 (2) |
| Na—S1ii | 3.3864 (9) | C4—C5 | 1.512 (2) |
| Na—S1iii | 3.3866 (10) | C4—H4 | 0.98 (3) |
| S1—O12 | 1.4435 (14) | C5—O5 | 1.415 (2) |
| S1—O13 | 1.4496 (13) | C5—H5A | 0.97 (3) |
| S1—O11 | 1.4562 (13) | C5—H5B | 0.97 (4) |
| S1—C1 | 1.8034 (17) | O1—H1O | 0.74 (4) |
| S1—Naiv | 3.3865 (9) | O2—H2O | 0.88 (4) |
| S1—Nav | 3.3866 (10) | O3—H3O | 0.87 (3) |
| O12—Nav | 2.3728 (15) | O4—H4O | 0.86 (4) |
| O13—Naiv | 2.2661 (16) | O5—Navi | 2.2524 (16) |
| C1—O1 | 1.406 (2) | O5—H5O | 0.80 (5) |
| C1—C2 | 1.523 (2) | ||
| O5i—Na—O13ii | 96.36 (6) | O11—S1—Naiv | 141.71 (5) |
| O5i—Na—O12iii | 105.63 (6) | C1—S1—Naiv | 90.25 (6) |
| O13ii—Na—O12iii | 93.66 (6) | Na—S1—Naiv | 121.70 (3) |
| O5i—Na—O1 | 101.70 (6) | O12—S1—Nav | 35.88 (6) |
| O13ii—Na—O1 | 161.60 (6) | O13—S1—Nav | 96.24 (6) |
| O12iii—Na—O1 | 78.19 (5) | O11—S1—Nav | 94.58 (6) |
| O5i—Na—O2 | 161.20 (6) | C1—S1—Nav | 141.61 (6) |
| O13ii—Na—O2 | 92.49 (6) | Na—S1—Nav | 140.21 (3) |
| O12iii—Na—O2 | 90.27 (5) | Naiv—S1—Nav | 91.60 (2) |
| O1—Na—O2 | 71.30 (5) | S1—O11—Na | 109.54 (7) |
| O5i—Na—O11 | 91.52 (6) | S1—O12—Nav | 123.24 (8) |
| O13ii—Na—O11 | 107.60 (5) | S1—O13—Naiv | 130.10 (9) |
| O12iii—Na—O11 | 151.12 (6) | O1—C1—C2 | 108.62 (13) |
| O1—Na—O11 | 75.63 (5) | O1—C1—S1 | 107.39 (11) |
| O2—Na—O11 | 69.96 (5) | C2—C1—S1 | 112.68 (11) |
| O5i—Na—C1 | 115.69 (6) | O1—C1—Na | 49.01 (8) |
| O13ii—Na—C1 | 142.37 (6) | C2—C1—Na | 81.73 (9) |
| O12iii—Na—C1 | 95.93 (5) | S1—C1—Na | 81.65 (6) |
| O1—Na—C1 | 26.49 (4) | O1—C1—H1 | 113.8 (17) |
| O2—Na—C1 | 51.26 (5) | C2—C1—H1 | 110.4 (17) |
| O11—Na—C1 | 55.35 (5) | S1—C1—H1 | 104.0 (16) |
| O5i—Na—S1 | 96.73 (5) | Na—C1—H1 | 162.5 (17) |
| O13ii—Na—S1 | 130.25 (5) | O2—C2—C1 | 111.14 (13) |
| O12iii—Na—S1 | 127.92 (5) | O2—C2—C3 | 105.16 (13) |
| O1—Na—S1 | 51.16 (3) | C1—C2—C3 | 111.34 (13) |
| O2—Na—S1 | 65.10 (4) | O2—C2—H2 | 113.6 (17) |
| O11—Na—S1 | 24.48 (3) | C1—C2—H2 | 109.9 (17) |
| C1—Na—S1 | 32.60 (3) | C3—C2—H2 | 105.4 (16) |
| O5i—Na—S1ii | 115.37 (5) | O3—C3—C4 | 112.49 (13) |
| O13ii—Na—S1ii | 19.11 (4) | O3—C3—C2 | 109.19 (13) |
| O12iii—Na—S1ii | 89.97 (4) | C4—C3—C2 | 109.33 (13) |
| O1—Na—S1ii | 142.89 (4) | O3—C3—H3 | 110.7 (18) |
| O2—Na—S1ii | 73.74 (4) | C4—C3—H3 | 109.1 (17) |
| O11—Na—S1ii | 103.67 (4) | C2—C3—H3 | 105.7 (17) |
| C1—Na—S1ii | 124.58 (4) | O4—C4—C5 | 112.34 (15) |
| S1—Na—S1ii | 121.70 (3) | O4—C4—C3 | 110.35 (14) |
| O5i—Na—S1iii | 86.16 (5) | C5—C4—C3 | 112.70 (14) |
| O13ii—Na—S1iii | 88.41 (4) | O4—C4—H4 | 106.7 (16) |
| O12iii—Na—S1iii | 20.89 (4) | C5—C4—H4 | 105.9 (15) |
| O1—Na—S1iii | 89.30 (4) | C3—C4—H4 | 108.5 (16) |
| O2—Na—S1iii | 110.71 (4) | O5—C5—C4 | 111.02 (15) |
| O11—Na—S1iii | 163.98 (4) | O5—C5—H5A | 112.1 (17) |
| C1—Na—S1iii | 111.76 (4) | C4—C5—H5A | 108.1 (17) |
| S1—Na—S1iii | 140.21 (3) | O5—C5—H5B | 109 (2) |
| S1ii—Na—S1iii | 91.60 (2) | C4—C5—H5B | 110.9 (19) |
| O12—S1—O13 | 114.87 (9) | H5A—C5—H5B | 106 (3) |
| O12—S1—O11 | 112.80 (8) | C1—O1—Na | 104.51 (10) |
| O13—S1—O11 | 110.92 (8) | C1—O1—H1O | 112 (3) |
| O12—S1—C1 | 105.74 (8) | Na—O1—H1O | 114 (3) |
| O13—S1—C1 | 104.52 (8) | C2—O2—Na | 112.86 (10) |
| O11—S1—C1 | 107.22 (7) | C2—O2—H2O | 109 (2) |
| O12—S1—Na | 142.43 (6) | Na—O2—H2O | 108 (2) |
| O13—S1—Na | 102.56 (6) | C3—O3—H3O | 108 (2) |
| O11—S1—Na | 45.97 (6) | C4—O4—H4O | 111 (3) |
| C1—S1—Na | 65.75 (6) | C5—O5—Navi | 134.32 (12) |
| O12—S1—Naiv | 93.81 (6) | C5—O5—H5O | 108 (3) |
| O13—S1—Naiv | 30.79 (6) | Navi—O5—H5O | 118 (3) |
| O12—S1—O11—Na | −142.14 (7) | O12—S1—C1—Na | 140.92 (7) |
| O13—S1—O11—Na | 87.39 (8) | O13—S1—C1—Na | −97.46 (7) |
| C1—S1—O11—Na | −26.15 (9) | O11—S1—C1—Na | 20.34 (7) |
| Naiv—S1—O11—Na | 87.43 (9) | Naiv—S1—C1—Na | −125.05 (4) |
| Nav—S1—O11—Na | −174.14 (5) | Nav—S1—C1—Na | 142.05 (6) |
| O13—S1—O12—Nav | 64.12 (12) | O1—C1—C2—O2 | −55.53 (17) |
| O11—S1—O12—Nav | −64.32 (11) | S1—C1—C2—O2 | 63.32 (15) |
| C1—S1—O12—Nav | 178.80 (9) | Na—C1—C2—O2 | −13.98 (11) |
| Na—S1—O12—Nav | −110.68 (9) | O1—C1—C2—C3 | 61.35 (16) |
| Naiv—S1—O12—Nav | 87.47 (9) | S1—C1—C2—C3 | −179.80 (11) |
| O12—S1—O13—Naiv | 50.59 (13) | Na—C1—C2—C3 | 102.90 (12) |
| O11—S1—O13—Naiv | 179.96 (9) | O2—C2—C3—O3 | 175.85 (13) |
| C1—S1—O13—Naiv | −64.81 (12) | C1—C2—C3—O3 | 55.39 (16) |
| Na—S1—O13—Naiv | −132.66 (9) | O2—C2—C3—C4 | −60.69 (16) |
| Nav—S1—O13—Naiv | 82.62 (10) | C1—C2—C3—C4 | 178.85 (14) |
| O12—S1—C1—O1 | −176.87 (11) | O3—C3—C4—O4 | 58.72 (17) |
| O13—S1—C1—O1 | −55.25 (13) | C2—C3—C4—O4 | −62.77 (18) |
| O11—S1—C1—O1 | 62.54 (12) | O3—C3—C4—C5 | −67.77 (18) |
| Na—S1—C1—O1 | 42.21 (9) | C2—C3—C4—C5 | 170.74 (14) |
| Naiv—S1—C1—O1 | −82.85 (10) | O4—C4—C5—O5 | 66.8 (2) |
| Nav—S1—C1—O1 | −175.75 (7) | C3—C4—C5—O5 | −167.74 (14) |
| O12—S1—C1—C2 | 63.56 (13) | C2—C1—O1—Na | 60.41 (13) |
| O13—S1—C1—C2 | −174.82 (12) | S1—C1—O1—Na | −61.72 (10) |
| O11—S1—C1—C2 | −57.02 (13) | C1—C2—O2—Na | 19.43 (15) |
| Na—S1—C1—C2 | −77.36 (11) | C3—C2—O2—Na | −101.16 (12) |
| Naiv—S1—C1—C2 | 157.59 (11) | C4—C5—O5—Navi | −108.80 (17) |
| Nav—S1—C1—C2 | 64.69 (15) |
| H··· | ||||
| C5—H5 | 0.97 (4) | 2.48 (3) | 3.394 (2) | 157 (3) |
| O1—H1 | 0.74 (4) | 2.00 (4) | 2.6813 (19) | 152 (4) |
| O2—H2 | 0.88 (4) | 1.97 (4) | 2.8311 (19) | 164 (3) |
| O3—H3 | 0.87 (3) | 1.79 (3) | 2.664 (2) | 173 (3) |
| O4—H4 | 0.86 (4) | 2.11 (4) | 2.936 (2) | 162 (4) |
| O5—H5 | 0.80 (5) | 1.99 (5) | 2.782 (2) | 166 (5) |