| Literature DB >> 27307999 |
M John Plater1, William T A Harrison1.
Abstract
In the cation of the title hydrated mol-ecular salt, C6H7N2O2 (+)·Cl(-)·H2O, the six-membered ring shows unequal bond lengths consistent with delocalization of electrons over two separate 6π systems with single bonds between them. In the crystal, the components are linked by N-H⋯Cl, N-H⋯O, O-H⋯Cl and O-H⋯O hydrogen bonds, generating double layers propagating in (100).Entities:
Keywords: anti-aromatic; conjugation; crystal structure; hydrogen bonds; layered structure
Year: 2016 PMID: 27307999 PMCID: PMC4908533 DOI: 10.1107/S2056989016005107
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of (I) showing 50% displacement ellipsoids. Hydrogen bonds are shown as double-dashed lines.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H2 | 0.81 (5) | 2.33 (5) | 2.653 (4) | 105 (4) |
| N2—H4 | 0.84 (4) | 2.23 (5) | 2.595 (4) | 107 (4) |
| N1—H1 | 0.80 (5) | 2.45 (5) | 3.238 (3) | 169 (4) |
| N1—H2 | 0.81 (5) | 2.25 (5) | 3.011 (4) | 156 (4) |
| N2—H3 | 0.93 (4) | 2.22 (4) | 3.149 (3) | 177 (4) |
| N2—H4 | 0.83 (5) | 2.44 (5) | 3.231 (3) | 158 (4) |
| O2—H1 | 0.92 (5) | 1.65 (5) | 2.548 (4) | 165 (4) |
| O3—H1 | 0.88 (5) | 1.98 (5) | 2.801 (4) | 154 (4) |
| O3—H2 | 1.00 (5) | 2.11 (5) | 3.116 (3) | 176 (4) |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .
Figure 2Detail of the crystal structure of (I) showing the formation of [001] chains of cations and chloride ions linked by N—H⋯Cl hydrogen bonds. Symmetry codes as in Table 1 ▸.
Figure 3Detail of the crystal structure of (I) showing the formation of [001] chains of cations and water molecules linked by O—H⋯O and N—H⋯O hydrogen bonds. Symmetry codes as in Table 1 ▸.
Figure 4The packing in (I) viewed along [001] showing the formation of (100) double layers.
Figure 5UV/visible spectrum of (I) (2.3 × 10−4 M solution in ethanol).
Experimental details
| Crystal data | |
| Chemical formula | C6H7N2O2·Cl·H2O |
|
| 192.60 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 100 |
|
| 6.3070 (7), 14.9614 (18), 8.9198 (11) |
| β (°) | 93.457 (1) |
|
| 840.15 (17) |
|
| 4 |
| Radiation type | Mo |
| μ (mm−1) | 0.42 |
| Crystal size (mm) | 0.11 × 0.04 × 0.03 |
| Data collection | |
| Diffractometer | Rigaku Mercury CCD |
| Absorption correction | – |
| No. of measured, independent and observed [ | 3102, 3102, 2789 |
|
| ? |
| (sin θ/λ)max (Å−1) | 0.651 |
| Refinement | |
|
| 0.072, 0.159, 1.22 |
| No. of reflections | 3102 |
| No. of parameters | 131 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.57, −0.40 |
Computer programs: CrysAlis PRO (Rigaku, 2015 ▸), SHELXS97 and SHELXL97 (Sheldrick, 2008 ▸), ORTEP-3 (Farrugia, 2012 ▸) and publCIF (Westrip, 2010 ▸).
| C6H7N2O2·Cl·H2O | |
| Monoclinic, | Mo |
| Cell parameters from 1747 reflections | |
| θ = 3.2–27.5° | |
| µ = 0.42 mm−1 | |
| β = 93.457 (1)° | |
| Rod, purple | |
| 0.11 × 0.04 × 0.03 mm |
| Rigaku Mercury CCD diffractometer | θmax = 27.6°, θmin = 2.7° |
| ω scans | |
| 3102 measured reflections | |
| 3102 independent reflections | |
| 2789 reflections with |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Hydrogen site location: difference Fourier map |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max < 0.001 | |
| 3102 reflections | Δρmax = 0.56 e Å−3 |
| 131 parameters | Δρmin = −0.39 e Å−3 |
| 0 restraints |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refined as a 2-component twin (180° rotation about [001]) |
| C1 | 0.2403 (6) | 0.3972 (2) | 0.3386 (4) | 0.0152 (7) | |
| H1 | 0.2413 | 0.3419 | 0.2865 | 0.018* | |
| C2 | 0.2473 (6) | 0.3979 (2) | 0.4998 (4) | 0.0132 (7) | |
| C3 | 0.2536 (6) | 0.4888 (2) | 0.5792 (4) | 0.0120 (7) | |
| C4 | 0.2459 (6) | 0.5671 (2) | 0.4970 (4) | 0.0155 (7) | |
| H4 | 0.2493 | 0.6233 | 0.5468 | 0.019* | |
| C5 | 0.2332 (6) | 0.5632 (2) | 0.3392 (4) | 0.0133 (7) | |
| C6 | 0.2324 (6) | 0.4747 (2) | 0.2601 (4) | 0.0133 (7) | |
| N1 | 0.2648 (6) | 0.4838 (2) | 0.7271 (3) | 0.0165 (7) | |
| H1n | 0.265 (7) | 0.527 (3) | 0.779 (5) | 0.020* | |
| H2n | 0.270 (7) | 0.436 (3) | 0.770 (5) | 0.020* | |
| N2 | 0.2212 (6) | 0.6344 (2) | 0.2543 (4) | 0.0162 (7) | |
| H3n | 0.227 (7) | 0.690 (3) | 0.300 (5) | 0.019* | |
| H4n | 0.216 (7) | 0.629 (3) | 0.161 (5) | 0.019* | |
| O1 | 0.2459 (4) | 0.33037 (17) | 0.5778 (3) | 0.0184 (6) | |
| O2 | 0.2219 (5) | 0.48297 (18) | 0.1125 (3) | 0.0201 (6) | |
| H1o | 0.230 (7) | 0.430 (3) | 0.063 (5) | 0.024* | |
| Cl1 | 0.22638 (16) | 0.67344 (6) | 0.89828 (10) | 0.0208 (3) | |
| O3 | 0.3077 (5) | 0.34226 (17) | −0.0329 (3) | 0.0223 (6) | |
| H1w | 0.247 (8) | 0.294 (3) | −0.001 (5) | 0.027* | |
| H2w | 0.458 (8) | 0.334 (3) | 0.008 (6) | 0.027* |
| C1 | 0.019 (2) | 0.0121 (15) | 0.0149 (17) | 0.0016 (14) | 0.0001 (14) | −0.0023 (13) |
| C2 | 0.0134 (18) | 0.0119 (15) | 0.0146 (17) | −0.0007 (14) | 0.0013 (14) | −0.0015 (13) |
| C3 | 0.0101 (17) | 0.0119 (15) | 0.0137 (16) | 0.0012 (13) | −0.0030 (13) | −0.0036 (12) |
| C4 | 0.0170 (19) | 0.0134 (16) | 0.0161 (17) | −0.0001 (15) | 0.0001 (14) | −0.0038 (13) |
| C5 | 0.0118 (18) | 0.0113 (15) | 0.0168 (17) | −0.0006 (14) | 0.0005 (14) | 0.0021 (13) |
| C6 | 0.0105 (18) | 0.0179 (16) | 0.0112 (16) | 0.0006 (14) | −0.0014 (13) | −0.0031 (13) |
| N1 | 0.0243 (19) | 0.0150 (14) | 0.0101 (15) | 0.0015 (14) | −0.0005 (13) | −0.0001 (12) |
| N2 | 0.0246 (19) | 0.0122 (13) | 0.0120 (15) | −0.0015 (13) | 0.0038 (13) | −0.0003 (12) |
| O1 | 0.0271 (15) | 0.0137 (11) | 0.0143 (12) | 0.0001 (12) | 0.0017 (11) | 0.0015 (10) |
| O2 | 0.0335 (18) | 0.0165 (13) | 0.0103 (12) | 0.0016 (12) | 0.0008 (11) | −0.0001 (10) |
| Cl1 | 0.0343 (5) | 0.0136 (4) | 0.0144 (4) | −0.0010 (4) | −0.0010 (4) | 0.0012 (3) |
| O3 | 0.0368 (18) | 0.0133 (13) | 0.0170 (14) | −0.0015 (12) | 0.0034 (12) | 0.0015 (10) |
| C1—C6 | 1.354 (5) | C5—C6 | 1.500 (5) |
| C1—C2 | 1.436 (5) | C6—O2 | 1.320 (4) |
| C1—H1 | 0.9500 | N1—H1n | 0.80 (5) |
| C2—O1 | 1.227 (4) | N1—H2n | 0.81 (5) |
| C2—C3 | 1.532 (4) | N2—H3n | 0.93 (4) |
| C3—N1 | 1.320 (4) | N2—H4n | 0.83 (5) |
| C3—C4 | 1.381 (5) | O2—H1o | 0.92 (5) |
| C4—C5 | 1.406 (5) | O3—H1w | 0.88 (5) |
| C4—H4 | 0.9500 | O3—H2w | 1.00 (5) |
| C5—N2 | 1.306 (4) | ||
| C6—C1—C2 | 120.6 (3) | N2—C5—C6 | 116.6 (3) |
| C6—C1—H1 | 119.7 | C4—C5—C6 | 120.4 (3) |
| C2—C1—H1 | 119.7 | O2—C6—C1 | 126.4 (3) |
| O1—C2—C1 | 124.1 (3) | O2—C6—C5 | 112.6 (3) |
| O1—C2—C3 | 118.0 (3) | C1—C6—C5 | 120.9 (3) |
| C1—C2—C3 | 117.9 (3) | C3—N1—H1n | 122 (3) |
| N1—C3—C4 | 125.2 (3) | C3—N1—H2n | 121 (3) |
| N1—C3—C2 | 114.2 (3) | H1n—N1—H2n | 117 (4) |
| C4—C3—C2 | 120.6 (3) | C5—N2—H3n | 119 (3) |
| C3—C4—C5 | 119.6 (3) | C5—N2—H4n | 120 (3) |
| C3—C4—H4 | 120.2 | H3n—N2—H4n | 121 (4) |
| C5—C4—H4 | 120.2 | C6—O2—H1o | 114 (3) |
| N2—C5—C4 | 123.0 (3) | H1w—O3—H2w | 102 (4) |
| C6—C1—C2—O1 | 176.9 (4) | C3—C4—C5—N2 | 178.6 (4) |
| C6—C1—C2—C3 | −2.2 (5) | C3—C4—C5—C6 | −1.3 (6) |
| O1—C2—C3—N1 | 2.4 (5) | C2—C1—C6—O2 | −178.8 (4) |
| C1—C2—C3—N1 | −178.5 (3) | C2—C1—C6—C5 | 0.7 (6) |
| O1—C2—C3—C4 | −177.1 (4) | N2—C5—C6—O2 | 0.8 (5) |
| C1—C2—C3—C4 | 2.0 (5) | C4—C5—C6—O2 | −179.3 (3) |
| N1—C3—C4—C5 | −179.7 (4) | N2—C5—C6—C1 | −178.8 (4) |
| C2—C3—C4—C5 | −0.3 (5) | C4—C5—C6—C1 | 1.1 (6) |
| H··· | ||||
| N1—H2 | 0.81 (5) | 2.33 (5) | 2.653 (4) | 105 (4) |
| N2—H4 | 0.84 (4) | 2.23 (5) | 2.595 (4) | 107 (4) |
| N1—H1 | 0.80 (5) | 2.45 (5) | 3.238 (3) | 169 (4) |
| N1—H2 | 0.81 (5) | 2.25 (5) | 3.011 (4) | 156 (4) |
| N2—H3 | 0.93 (4) | 2.22 (4) | 3.149 (3) | 177 (4) |
| N2—H4 | 0.83 (5) | 2.44 (5) | 3.231 (3) | 158 (4) |
| O2—H1 | 0.92 (5) | 1.65 (5) | 2.548 (4) | 165 (4) |
| O3—H1 | 0.88 (5) | 1.98 (5) | 2.801 (4) | 154 (4) |
| O3—H2 | 1.00 (5) | 2.11 (5) | 3.116 (3) | 176 (4) |