| Literature DB >> 27305943 |
Jie Zhu1,2,3, Shunlin Hu1,2, Haixu Xu1,2, Jingjing Liu1,2, Zhenzhen Zhao1,2, Xiaoquan Wang1,2, Xiufan Liu4,5.
Abstract
BACKGROUND: Newcastle disease (ND) is one of the most contagious and devastating diseases to poultry in the world. The causative agents are virulent strains of Newcastle disease virus (NDV), which belong to the genus Avulavirus, sub-family Paramyxoviridae, family Paramyxovirinae. Knowing the genomic and antigenic characteristics of virulent NDVs might contribute to ND control in China.Entities:
Keywords: Antigenic difference; E347K; Sub-genotype VIId; Variation; Virulent Newcastle disease virus
Mesh:
Substances:
Year: 2016 PMID: 27305943 PMCID: PMC4910237 DOI: 10.1186/s12917-016-0732-6
Source DB: PubMed Journal: BMC Vet Res ISSN: 1746-6148 Impact factor: 2.741
NDVs characterized in this study
| NDV isolates | Year of isolation | Host | F gene | 345–353 Residues of HN | HN gene | NDV isolates | Year of isolation | Host | F gene | 345–353 Residues of HN | HN gene |
|---|---|---|---|---|---|---|---|---|---|---|---|
| JS-01-11-Ch | 2011 | Broiler | JQ013855 | PDEQDYQIR | JQ013835 | JS-09-12-Ch | 2012 | Layer | KJ184579 | PDKQDYQIR | KJ184625 |
| JS-03-11-Ch | 2011 | Broiler | JQ013857 | PDEQDYQIR | JQ013838 | JS-10-12-Ch | 2012 | Layer | KJ184580 | PDKQDYQIR | KJ184626 |
| JS-04-11-Ch | 2011 | Layer | JQ013858 | PDEQDYQIR | KJ184630 | JS-11-12- Ch | 2012 | Layer | KJ184581 | PDKQDYQIR | KJ184627 |
| JS-05-11-Ch | 2011 | Layer | JQ013859 | PDEQDYQIR | KJ184631 | JS-12-12-Ch | 2012 | Broiler | KJ184582 | PDKQDYQIR | KJ184601 |
| JS-06-11-Ch | 2011 | Layer | JQ013860 | PDKQDYQIR | JQ013839 | JS-13-12-Ch | 2012 | Broiler | KJ184583 | PDKQDYQIR | KJ184602 |
| JS-07-11-Ch | 2011 | Broiler | JQ013861 | PDKQDYQIR | KJ184632 | JS-14-12-Ch | 2012 | Broiler | KJ184584 | PDKQDYQIR | KJ184603 |
| JS-08-11-Ch | 2011 | Broiler | JQ013862 | PDGQDYQIR | KJ184633 | AH-02-12-Ch | 2012 | Layer | KJ184597 | PDKQDYQIR | KJ184616 |
| JS-09-11-Ch | 2011 | Broiler | JQ013863 | PDEQDYQIR | KJ184634 | HeN-01-12-Ch | 2012 | Layer | KJ184598 | PDKQDYQIR | KJ184617 |
| JS-10-11-Ch | 2011 | Layer | JQ013864 | PDGQDYQIR | JQ013840 | SD-01-12-Ch | 2012 | Broiler | KJ184594 | PDKQDYQIR | KJ184613 |
| JS-11-11-Ch | 2011 | Layer | JQ013865 | PDKQDYQIR | JQ013841 | SD-02-12-Ch | 2012 | Broiler | KJ184595 | PDKQDYQIR | KJ184614 |
| JS-12-11-Ch | 2011 | Broiler | JQ013866 | PDEQDYQIR | JQ013842 | SD-03-12-Ch | 2012 | Broiler | KJ184596 | PDKQDYQIR | KJ184615 |
| JS-13-11-Ch | 2011 | Broiler | JQ013867 | PDEQDYQIR | JQ013843 | JS-16-12-Ch | 2012 | Broiler | KJ184585 | PDKQDYQIR | KJ184604 |
| JS-14-11-Ch | 2011 | Broiler | JQ013868 | PDKQDYQIR | JQ013852 | JS-17-12-Ch | 2012 | Broiler | KJ184586 | PDKQDYQIR | KJ184605 |
| JS-15-11-Ch | 2011 | Broiler | JQ013869 | PDEQDYQIR | JQ013844 | JS-18-12- Ch | 2012 | Broiler | KJ184587 | PDEQDYQIR | KJ184606 |
| JS-16-11-Ch | 2011 | Broiler | JQ013870 | PDKQDYQIR | JQ013845 | JS-19-12-Ch | 2012 | Broiler | KJ184588 | PDKQDYQIR | KJ184607 |
| JS-17-11-Ch | 2011 | Layer | JQ013871 | PDKQDYQIR | JQ013846 | JS-20-12-Ch | 2012 | Broiler | KJ184589 | PDKQDYQIR | KJ184608 |
| JS-19-11-Ch | 2011 | Layer | JQ013873 | PDKQDYQIR | JQ013847 | JS-21-12-Ch | 2012 | Broiler | KJ184590 | PDKQDYQIR | KJ184609 |
| JS-20-11-Ch | 2011 | Broiler | JQ013874 | PDEQDYQIR | JQ013848 | JS-22-12-Ch | 2012 | Broiler | KJ184591 | PDEQDYQIR | KJ184610 |
| JS-21-11-Ch | 2011 | Broiler | JQ013875 | PDEQDYQIR | JQ013851 | JS-23-12-Ch | 2012 | Broiler | KJ184592 | PDKQDYQIR | KJ184611 |
| SD-01-11-Ch | 2011 | Layer | JQ013877 | PDKQDYQIR | JQ013850 | JS-24-12-Ch | 2012 | Broiler | KJ184593 | PDKQDYQIR | KJ184612 |
| SD-02-11-Ch | 2011 | Layer | JQ013878 | PDKQDYQIR | JQ013849 | JS-21-13-Ch | 2013 | Layer | KP064014 | PDKQDYQIR | KP064023 |
| JS-02-12-Ch | 2012 | Layer | KJ184599 | PDKQDYQIR | KJ184618 | JS-22-13-Ch | 2013 | Broiler | KP064015 | PDKQDYQIR | KP064024 |
| JS-03-12-Ch | 2012 | Broiler | KJ184600 | PDEQDYQIR | KJ184619 | JS-23-13-Ch | 2013 | Broiler | KP064016 | PDKQDYQIR | KP064025 |
| JS-04-12-Ch | 2012 | Broiler | KJ184574 | PDEQDYQIR | KJ184620 | JS-24-13-Ch | 2013 | Layer | KP064017 | PDKQDYQIR | KP064027 |
| JS-05-12-Ch | 2012 | Broiler | KJ184575 | PDEQDYQIR | KJ184621 | JS-27-13-Ch | 2013 | Layer | KP064018 | PDKQDYQIR | KP064021 |
| JS-06-12-Ch | 2012 | Layer | KJ184576 | PDKQDYQIR | KJ184622 | JS-30-13-Ch | 2013 | Broiler | KP064020 | PDKQDYQIR | KP064026 |
| JS-07-12-Ch | 2012 | Layer | KJ184577 | PDKQDYQIR | KJ184623 | SD-25-13-Ch | 2013 | Broiler | KP064019 | PDKQDYQIR | KP064022 |
| JS-08-12-Ch | 2012 | Broiler | KJ184578 | PDKQDYQIR | KJ184624 |
Fig. 1Phylogenetic tree of 55 sub-genotype VIId NDV strains based on the whole region of the F gene
Fig. 2Phylogenetic tree of 55 sub-genotype VIId NDV strains based on the complete HN gene
Coefficients of antigenic similarity (R) between NDV isolates and LaSota strain
| Strains |
| 345–353 Residues of HN |
|---|---|---|
| SD-01-11-Ch | 0.04a 0.12b | PD |
| JS-07-11-Ch | 0.12a 0.12b | PD |
| JS-14-12-Ch | 0.06a 0.12b | PD |
| HeN-01-12-Ch | 0.12a 0.12b | PD |
| JS-27-13-Ch | 0.17a 0.25b | PD |
| JS-08-11-Ch | 0.35a 0.35b | PD |
| JS-15-11-Ch | 0.35a 0.5b | PD |
| JS-05-12-Ch | 0.35a 0.35b | PD |
| JS-18-12-Ch | 0.25a 0.35b | PD |
| JS-22-12-Ch | 0.35a 0.35b | PD |
aChicken embryo cross-neutralization test
bCross-hemagglutination inhibition test
c0.67 ≤ R ≤ 1.5, indicates no significant antigenic difference between the two viruses
0.5 ≤ R ≤ 0.67 indicates a minor difference between the two viruses
R < 0.5 indicates a major difference between the two virus strains
Pathogenicity tests of the isolates
| Strains | ICPIa | MDTb (h) |
|---|---|---|
| SD-01-11-Ch | 1.84 | 48 |
| JS-07-11-Ch | 1.86 | 46.8 |
| JS-14-12-Ch | 1.94 | 43.8 |
| HeN-01-12-Ch | 1.82 | 52 |
| JS-27-13-Ch | 1.86 | 46 |
| JS-08-11-Ch | 1.94 | 46 |
| JS-15-11-Ch | 1.92 | 48 |
| JS-05-12-Ch | 1.96 | 49.2 |
| JS-18-12-Ch | 1.84 | 48 |
| JS-22-12-Ch | 1.86 | 46 |
aMDT = mean death time
bICPI = intracerebral pathogenicity index
Protection of vaccinated SPF chickens with inactivated oil-emulsion vaccines against challenge with the predominant variant NDVs
| Vaccine-Challengea | HI titer(log2) | Challenge | Protection | |||
|---|---|---|---|---|---|---|
| Strain | Route | NO. birds | Clinical signs | Mortality | ||
| La-JS22 | 6.3 ± 1.8 | JS-01-11-Ch | ED/IN | 10 | 0/10 | 0 % (0/10) |
| La-JS14 | 6.3 ± 1.8 | JS-14-12-Ch | ED/IN | 10 | 0/10 | 0 % (0/10) |
| Control-JS22 | 0 | JS-01-11-Ch | ED/IN | 5 | 5/5 | 100 % (5/5) |
| Control –JS14 | 0 | JS-14-12-Ch | ED/IN | 5 | 5/5 | 100 % (5/5) |
| La-PBS | 6.3 ± 1.8 | PBS | ED/IN | 5 | 0/10 | 0 % (0/5) |
| Control-PBS | 0 | PBS | ED/IN | 5 | 0/10 | 0 % (0/5) |
aLa-JS22 and Control-JS22 = Challenge with 106 EID50 JS-22-11-Ch; La-JS14 and Control-JS14 = Challenge with 106 EID50 JS-14-12-Ch
Frequency of isolation of challenge virus from SPF chickens
| Group | Samples (positive/total) | |||||
|---|---|---|---|---|---|---|
| Day 3 pc | Day 5 pc | Day 7 pc | ||||
| OS | CS | OS | CS | OS | CS | |
| La-JS22 | 7/10 | 2/10 | 5/10 | 6/10 | 1/10 | 2/10 |
| La-JS14 | 10/10 | 5/10 | 7/10 | 7/10 | 3/10 | 4/10 |
| Control-SD | 5/5 | 5/5 | – | – | – | – |
| Control-JS | 5/5 | 5/5 | – | – | – | – |
–the birds were all dead within the day 5pc
OS = oral swabs; CS = cloacal swabs
Primers used in the study
| Fragment designation | Primer sequence (5’–3’) | Position | Expected size (bp) |
|---|---|---|---|
| FTY1 | CgTAgA AAA AACACgggTAgAAgA | 4494-4517 | 958 |
| FTY2 | CAggTAggTRgCACgCATATT ATT | 5429-5452 | |
| F1 | ATGGGCTCCAAACCTTCTA | 4550-4568 | 1662 |
| F2 | TCCTGTGGTGGCTCTCAT | 6195-6212 | |
| HN1 | TAGAACGGTCAGAGGAGCCA | 6332-6351 | 2095 |
| HN2 | ATGATCTGGTGCTCTGCCCTT | 8407-8427 |