Literature DB >> 27305937

Erratum: Capecitabine from X-ray powder synchrotron data. Corrigendum.

Jan Rohlicek1, Michal Husak1, Ales Gavenda2, Alexandr Jegorov3, Bohumil Kratochvil1, Andy Fitch4.   

Abstract

[This corrects the article DOI: 10.1107/S1600536809017905.].

Entities:  

Year:  2016        PMID: 27305937      PMCID: PMC4908560          DOI: 10.1107/S2056989016008252

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Following our powder-diffraction study of capecitabine (Rohlicek et al., 2009 ▸), Malińska et al. (2014 ▸) published the crystal structure of the same mol­ecule based on single-crystal data. Although they modelled the wrong enanti­omer [as was pointed out by Kratochvil et al. (2016 ▸)], the structures are very similar after inverting the single-crystal structure, including the disordered part of the mol­ecule (Fig. 1 ▸). Since single-crystal diffraction is more sensitive to H atoms than powder diffraction, Malinska et al. (2014 ▸) were able to locate the H atoms directly. This indicated a different tautomeric form of capecitabine to that assumed in our study, and as they pointed out, we had therefore placed one H atom wrongly.
Figure 1

Overlay of the capecitabine mol­ecular structures arising from powder diffraction (blue) and from single-crystal diffraction data (red). Only non-H atoms are shown for clarity.

In our defence, in the powder study, we placed the H atoms geometrically according to a reasonable chemical structure for capecitabine, which shows the tautomeric H atom attached to the N atom of the carbamate group and the plausible formation of an inter­molecular N—H⋯O hydrogen bond. As shown by Malińska et al. (2014 ▸), the H atom is actually located on the N atom of the pyrimidine ring (Fig. 2 ▸), thereby forming an intra­molecular N—H⋯O link.
Figure 2

Schemes for the tautomeric forms of capecitabine (a) assumed in the powder-diffraction study and (b) established in the single-crystal study of Malinska et al. (2014 ▸).

With respect to the fact that structure solution from powder diffraction data is based on the proposed molecular structure, readers should beware of the incorrectly placed H atom in Rohlicek et al. (2009 ▸) and they should be also beware of the wrong enantiomer in a single-crystal study of Malińska et al. (2014 ▸).
  2 in total

1.  Crystal structure and tautomerism of capecitabine.

Authors:  Maura Malińska; Piotr Krzeczyński; Ewelina Czerniec-Michalik; Kinga Trzcińska; Piotr Cmoch; Andrzej Kutner; Krzysztof Woźniak
Journal:  J Pharm Sci       Date:  2013-12-30       Impact factor: 3.534

2.  Capecitabine from X-ray powder synchrotron data.

Authors:  Jan Rohlicek; Michal Husak; Ales Gavenda; Alexandr Jegorov; Bohumil Kratochvil; Andy Fitch
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-05-20
  2 in total
  1 in total

1.  Multinuclear NMR Measurements and DFT Calculations for Capecitabine Tautomeric Form Assignment in a Solution.

Authors:  Piotr Cmoch; Piotr Krzeczyński; Andrzej Leś
Journal:  Molecules       Date:  2018-01-13       Impact factor: 4.411

  1 in total

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