Literature DB >> 27303024

Molecular Evolution and Functional Characterization of a Bifunctional Decarboxylase Involved in Lycopodium Alkaloid Biosynthesis.

Somnuk Bunsupa1, Kousuke Hanada1, Akira Maruyama1, Kaori Aoyagi1, Kana Komatsu1, Hideki Ueno1, Madoka Yamashita1, Ryosuke Sasaki1, Akira Oikawa1, Kazuki Saito2, Mami Yamazaki2.   

Abstract

Lycopodium alkaloids (LAs) are derived from lysine (Lys) and are found mainly in Huperziaceae and Lycopodiaceae. LAs are potentially useful against Alzheimer's disease, schizophrenia, and myasthenia gravis. Here, we cloned the bifunctional lysine/ornithine decarboxylase (L/ODC), the first gene involved in LA biosynthesis, from the LA-producing plants Lycopodium clavatum and Huperzia serrata We describe the in vitro and in vivo functional characterization of the L. clavatum L/ODC (LcL/ODC). The recombinant LcL/ODC preferentially catalyzed the decarboxylation of l-Lys over l-ornithine (l-Orn) by about 5 times. Transient expression of LcL/ODC fused with the amino or carboxyl terminus of green fluorescent protein, in onion (Allium cepa) epidermal cells and Nicotiana benthamiana leaves, showed LcL/ODC localization in the cytosol. Transgenic tobacco (Nicotiana tabacum) hairy roots and Arabidopsis (Arabidopsis thaliana) plants expressing LcL/ODC enhanced the production of a Lys-derived alkaloid, anabasine, and cadaverine, respectively, thus, confirming the function of LcL/ODC in plants. In addition, we present an example of the convergent evolution of plant Lys decarboxylase that resulted in the production of Lys-derived alkaloids in Leguminosae (legumes) and Lycopodiaceae (clubmosses). This convergent evolution event probably occurred via the promiscuous functions of the ancestral Orn decarboxylase, which is an enzyme involved in the primary metabolism of polyamine. The positive selection sites were detected by statistical analyses using phylogenetic trees and were confirmed by site-directed mutagenesis, suggesting the importance of those sites in granting the promiscuous function to Lys decarboxylase while retaining the ancestral Orn decarboxylase function. This study contributes to a better understanding of LA biosynthesis and the molecular evolution of plant Lys decarboxylase.
© 2016 American Society of Plant Biologists. All Rights Reserved.

Entities:  

Mesh:

Substances:

Year:  2016        PMID: 27303024      PMCID: PMC4972286          DOI: 10.1104/pp.16.00639

Source DB:  PubMed          Journal:  Plant Physiol        ISSN: 0032-0889            Impact factor:   8.340


  46 in total

Review 1.  Mining the biodiversity of plants: a revolution in the making.

Authors:  Vincenzo De Luca; Vonny Salim; Sayaka Masada Atsumi; Fang Yu
Journal:  Science       Date:  2012-06-29       Impact factor: 47.728

2.  The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling.

Authors:  Konstantin Arnold; Lorenza Bordoli; Jürgen Kopp; Torsten Schwede
Journal:  Bioinformatics       Date:  2005-11-13       Impact factor: 6.937

3.  Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level.

Authors:  Jianzhi Zhang; Rasmus Nielsen; Ziheng Yang
Journal:  Mol Biol Evol       Date:  2005-08-17       Impact factor: 16.240

4.  A structural insight into the inhibition of human and Leishmania donovani ornithine decarboxylases by 1-amino-oxy-3-aminopropane.

Authors:  Veronica T Dufe; Daniel Ingner; Olle Heby; Alex R Khomutov; Lo Persson; Salam Al-Karadaghi
Journal:  Biochem J       Date:  2007-07-15       Impact factor: 3.857

5.  Ohno's dilemma: evolution of new genes under continuous selection.

Authors:  Ulfar Bergthorsson; Dan I Andersson; John R Roth
Journal:  Proc Natl Acad Sci U S A       Date:  2007-10-17       Impact factor: 11.205

6.  SOAPdenovo-Trans: de novo transcriptome assembly with short RNA-Seq reads.

Authors:  Yinlong Xie; Gengxiong Wu; Jingbo Tang; Ruibang Luo; Jordan Patterson; Shanlin Liu; Weihua Huang; Guangzhu He; Shengchang Gu; Shengkang Li; Xin Zhou; Tak-Wah Lam; Yingrui Li; Xun Xu; Gane Ka-Shu Wong; Jun Wang
Journal:  Bioinformatics       Date:  2014-02-13       Impact factor: 6.937

Review 7.  Polyamine metabolism in Trypanosoma cruzi: studies on the expression and regulation of heterologous genes involved in polyamine biosynthesis.

Authors:  I D Algranati
Journal:  Amino Acids       Date:  2009-12-03       Impact factor: 3.520

8.  Comparison of 454-ESTs from Huperzia serrata and Phlegmariurus carinatus reveals putative genes involved in lycopodium alkaloid biosynthesis and developmental regulation.

Authors:  Hongmei Luo; Ying Li; Chao Sun; Qiong Wu; Jingyuan Song; Yongzhen Sun; André Steinmetz; Shilin Chen
Journal:  BMC Plant Biol       Date:  2010-09-21       Impact factor: 4.215

9.  The diverse bacterial origins of the Arabidopsis polyamine biosynthetic pathway.

Authors:  Crista Illingworth; Melinda J Mayer; Katherine Elliott; Colin Hanfrey; Nicholas J Walton; Anthony J Michael
Journal:  FEBS Lett       Date:  2003-08-14       Impact factor: 4.124

10.  Development of series of gateway binary vectors, pGWBs, for realizing efficient construction of fusion genes for plant transformation.

Authors:  Tsuyoshi Nakagawa; Takayuki Kurose; Takeshi Hino; Katsunori Tanaka; Makoto Kawamukai; Yasuo Niwa; Kiminori Toyooka; Ken Matsuoka; Tetsuro Jinbo; Tetsuya Kimura
Journal:  J Biosci Bioeng       Date:  2007-07       Impact factor: 2.894

View more
  9 in total

Review 1.  Using interdisciplinary, phylogeny-guided approaches to understand the evolution of plant metabolism.

Authors:  Craig A Schenck; Lucas Busta
Journal:  Plant Mol Biol       Date:  2021-11-23       Impact factor: 4.076

2.  Global transcriptome analysis of Huperzia serrata and identification of critical genes involved in the biosynthesis of huperzine A.

Authors:  Mengquan Yang; Wenjing You; Shiwen Wu; Zhen Fan; Baofu Xu; Mulan Zhu; Xuan Li; Youli Xiao
Journal:  BMC Genomics       Date:  2017-03-22       Impact factor: 3.969

Review 3.  Quinolizidine Alkaloid Biosynthesis in Lupins and Prospects for Grain Quality Improvement.

Authors:  Karen M Frick; Lars G Kamphuis; Kadambot H M Siddique; Karam B Singh; Rhonda C Foley
Journal:  Front Plant Sci       Date:  2017-01-31       Impact factor: 5.753

4.  Comprehensive relative quantitative metabolomics analysis of lycopodium alkaloids in different tissues of Huperzia serrata.

Authors:  Shiwen Wu; Zhen Fan; Youli Xiao
Journal:  Synth Syst Biotechnol       Date:  2017-12-26

5.  Identification of a Novel Gene Encoding the Specialized Alanine Decarboxylase in Tea (Camellia sinensis) Plants.

Authors:  Peixian Bai; Kang Wei; Liyuan Wang; Fen Zhang; Li Ruan; Hailin Li; Liyun Wu; Hao Cheng
Journal:  Molecules       Date:  2019-02-01       Impact factor: 4.411

6.  Contribution of Functional Divergence Through Copy Number Variations to the Inter-Species and Intra-Species Diversity in Specialized Metabolites.

Authors:  Kazumasa Shirai; Kousuke Hanada
Journal:  Front Plant Sci       Date:  2019-11-26       Impact factor: 5.753

7.  Metabolic diversification of nitrogen-containing metabolites by the expression of a heterologous lysine decarboxylase gene in Arabidopsis.

Authors:  Yohei Shimizu; Amit Rai; Yuko Okawa; Hajime Tomatsu; Masaru Sato; Kota Kera; Hideyuki Suzuki; Kazuki Saito; Mami Yamazaki
Journal:  Plant J       Date:  2019-08-27       Impact factor: 6.417

Review 8.  Application of metabolic engineering to enhance the content of alkaloids in medicinal plants.

Authors:  Soledad Mora-Vásquez; Guillermo Gael Wells-Abascal; Claudia Espinosa-Leal; Guy A Cardineau; Silverio García-Lara
Journal:  Metab Eng Commun       Date:  2022-02-16

9.  A metabolic regulon reveals early and late acting enzymes in neuroactive Lycopodium alkaloid biosynthesis.

Authors:  Ryan S Nett; Yaereen Dho; Yun-Yee Low; Elizabeth S Sattely
Journal:  Proc Natl Acad Sci U S A       Date:  2021-06-15       Impact factor: 11.205

  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.