Literature DB >> 27297496

A Statistical Physics Characterization of the Complex Systems Dynamics: Quantifying Complexity from Spatio-Temporal Interactions.

Hana Koorehdavoudi1, Paul Bogdan2.   

Abstract

Biological systems are frequently categorized as complex systems due to their capabilities of generating spatio-temporal structures from apparent random decisions. In spite of research on analyzing biological systems, we lack a quantifiable framework for measuring their complexity. To fill this gap, in this paper, we develop a new paradigm to study a collective group of N agents moving and interacting in a three-dimensional space. Our paradigm helps to identify the spatio-temporal states of the motion of the group and their associated transition probabilities. This framework enables the estimation of the free energy landscape corresponding to the identified states. Based on the energy landscape, we quantify missing information, emergence, self-organization and complexity for a collective motion. We show that the collective motion of the group of agents evolves to reach the most probable state with relatively lowest energy level and lowest missing information compared to other possible states. Our analysis demonstrates that the natural group of animals exhibit a higher degree of emergence, self-organization and complexity over time. Consequently, this algorithm can be integrated into new frameworks to engineer collective motions to achieve certain degrees of emergence, self-organization and complexity.

Entities:  

Year:  2016        PMID: 27297496      PMCID: PMC4906350          DOI: 10.1038/srep27602

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.379


  31 in total

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2.  Effective leadership and decision-making in animal groups on the move.

Authors:  Iain D Couzin; Jens Krause; Nigel R Franks; Simon A Levin
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3.  Collective memory and spatial sorting in animal groups.

Authors:  Iain D Couzin; Jens Krause; Richard James; Graeme D Ruxton; Nigel R Franks
Journal:  J Theor Biol       Date:  2002-09-07       Impact factor: 2.691

4.  Decoding the energy landscape: extracting structure, dynamics and thermodynamics.

Authors:  David J Wales
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2012-06-28       Impact factor: 4.226

5.  Observation time scale, free-energy landscapes, and molecular symmetry.

Authors:  David J Wales; Peter Salamon
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-27       Impact factor: 11.205

6.  Potential energy landscape of the two-dimensional XY model: higher-index stationary points.

Authors:  D Mehta; C Hughes; M Kastner; D J Wales
Journal:  J Chem Phys       Date:  2014-06-14       Impact factor: 3.488

7.  Visualizing energy landscapes with metric disconnectivity graphs.

Authors:  Lewis C Smeeton; Mark T Oakley; Roy L Johnston
Journal:  J Comput Chem       Date:  2014-05-28       Impact factor: 3.376

8.  Collective states, multistability and transitional behavior in schooling fish.

Authors:  Kolbjørn Tunstrøm; Yael Katz; Christos C Ioannou; Cristián Huepe; Matthew J Lutz; Iain D Couzin
Journal:  PLoS Comput Biol       Date:  2013-02-28       Impact factor: 4.475

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Journal:  Nat Commun       Date:  2014-08-28       Impact factor: 14.919

10.  Differentiated Anti-Predation Responses in a Superorganism.

Authors:  Thomas A O'Shea-Wheller; Ana B Sendova-Franks; Nigel R Franks
Journal:  PLoS One       Date:  2015-11-11       Impact factor: 3.240

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  7 in total

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Authors:  Paul Bogdan; Plamen Ch Ivanov; Sergio Pequito
Journal:  Front Physiol       Date:  2022-05-11       Impact factor: 4.755

2.  Multi-fractal characterization of bacterial swimming dynamics: a case study on real and simulated Serratia marcescens.

Authors:  Hana Koorehdavoudi; Paul Bogdan; Guopeng Wei; Radu Marculescu; Jiang Zhuang; Rika Wright Carlsen; Metin Sitti
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3.  Integrative biological simulation praxis: Considerations from physics, philosophy, and data/model curation practices.

Authors:  Gopal P Sarma; Victor Faundez
Journal:  Cell Logist       Date:  2017-11-29

4.  Quantifying emergence and self-organisation of Enterobacter cloacae microbial communities.

Authors:  Valeriu Balaban; Sean Lim; Gaurav Gupta; James Boedicker; Paul Bogdan
Journal:  Sci Rep       Date:  2018-08-17       Impact factor: 4.379

5.  General intelligence disentangled via a generality metric for natural and artificial intelligence.

Authors:  José Hernández-Orallo; Bao Sheng Loe; Lucy Cheke; Fernando Martínez-Plumed; Seán Ó hÉigeartaigh
Journal:  Sci Rep       Date:  2021-11-24       Impact factor: 4.379

6.  Assessing sustainability in North America's ecosystems using criticality and information theory.

Authors:  Elvia Ramírez-Carrillo; Oliver López-Corona; Juan C Toledo-Roy; Jon C Lovett; Fernando de León-González; Luis Osorio-Olvera; Julian Equihua; Everardo Robredo; Alejandro Frank; Rodolfo Dirzo; Vanessa Pérez-Cirera
Journal:  PLoS One       Date:  2018-07-16       Impact factor: 3.240

7.  Robust design from systems physics.

Authors:  Andrei A Klishin; Alec Kirkley; David J Singer; Greg van Anders
Journal:  Sci Rep       Date:  2020-08-31       Impact factor: 4.379

  7 in total

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