| Histological examination of gonads | Pelagic sharksPenguinsSea turtlesDolphins | Blue shark (Prionace glauca)Whitetip shark (Carcharhinus longimanus)Pygoscelids penguinsGreen sea turtle (Chelonia mydas)Loggerhead sea turtle (Caretta caretta)Olive Ridley sea turtle (Lepidochelys olivacea)Leatherback sea turtle (Dermochelys coriacea)Spotted dolphin (Stenella attenuata)Bottlenose dolphin (Tursiops truncatus)Harbour porpoise (Phocoena phocoena) | Reproductive biology/anatomyReproductive conditionGonadosomatic indexSex determination Sex ratioSexual maturity Age/size at maturity Gonadal conditionMaturity status Age classesBreeding periodSeasonalityNumber of embryos Fecundity/pregnancy rateSize range of gravid individualsAge–length relationship | Lethal approachRequires carcass recovery Incidental captures by fisheries nets Stranded individualsRequires adequately equipped laboratoryRequires experience for detailed morphological observation and accurate interpretationSpecific variations in the degree of gonadal differentiation at hatching (sea turtles) | Strasburg (1958); Owens (1980); Stevens (1983); Perrin and Reilly (1984); Hohn et al. (1985); Natanson and Cailliet (1986); Callard et al. (1989); Peddemors (1989); Read (1990); Kusher et al. (1992); Valencia and Leyton (1992); Gross et al. (1995); Merchant (1999); Hazin et al. (2001); Blanvillain et al. (2008); de Mitcheson (2009); Xia et al. (2011) |
| Analysis of growth marks in hard body parts:Dentine deposition rateOssification patternsVertebral annuli (band) countsSkeletochronology (humerus and scleral ossicle bones) | Pelagic sharksEarless sealsSea turtlesCetaceans | Leopard shark (Triakis semifasciata)Porbeagle shark (Lamna nasus)Shortfin mako (Isurus oxyrinchus)Blacktip shark (Carcharhinus limbatus)Spinner shark (Carcharhinus brevipinna)Green sea turtle (Ch. mydas)Loggerhead sea turtle (C. caretta)Leatherback sea turtle (D. coriacea)Harp seal (Phoca greonlandica)Beluga (Delphinapterus leucas)Dall's porpoise (Phocoenoides dalli)Short-finned pilot whale (Globicephala macrorhynchus)Bottlenose dolphin (T. truncatus) | AgeGrowth ratesAge–length relationshipAge at maturationSkeletal development (growth) and physiological maturity relationship | Requires carcass recovery or bone biopsiesNeed for validation with known-age dataAssumptions about:Deposition rates (annual)Recognition of layersInterpretation of layersLoss of layersRemodelling of bone and resorption of layers with growth (sea turtles)Requires correction factors in sea turtles (ectotherms) | Ogden et al. (1981); Bowen et al. (1983); Zug et al. (1986, 2002); Branstetter (1987); Peddemors (1989); Read (1990); Zug (1990); Kusher et al. (1992); Parham and Zug (1997); Bjorndal et al. (1998); Zug and Glor (1998); Campana et al. (2002); Natanson et al. (2002); Luque et al. (2007); Avens et al. (2009); Goshe et al. (2010); Snover et al. (2011) |
| Laparoscopy | Sea turtles | Green sea turtle (Ch. mydas)Loggerhead sea turtle (C. caretta) | Sex determinationReproductive conditionMaturity statusDiagnosis of pathological processes and anatomical anomalies (avian species) | Surgical techniqueInvasive and stressfulImpractical for sex determination in penguinsNot applicable in early stages of developmentRequires general (birds) or local anaesthetic (sea turtles)Could compromise the individual's health: Trauma to vital organs Potential infectionsRequires previous clinical and physical examination of the health state of the individualsLogistically difficult and time consuming in the fieldRequires specialized equipment and scientists/veterinarians with proper trainingExpensive | Samour et al. (1983); Wood et al. (1983); Wibbels et al. (1987b, 1990, 2000); McDonald (1996); Owens (1999); Wibbels (1999); Jessop et al. (2004a); Braun-McNeill et al. (2007); Cerit and Avanus (2007); Blanvillain et al. (2008); Costantini et al. (2008); Matta et al. (2008) |
| Cloacascopy | Penguins | Adélie penguin (Pygoscelis adeliae)Chinstrap penguin (Pygoscelis antarctica)Humboldt penguin (Spheniscus humboldti) | Sex determination | Requires structures well differentiated in sizeNot applicable to chicksApplicable only in individuals older than 11 monthsAccuracy is compromised towards the end of the breeding seasonSpecific variations in cloacae characteristics are difficult to assess in the fieldApplicability is dependent on field conditionsRequires specialized equipment and trained experts | Ainley et al. (1983); Samour et al. (1983); Boersma and Davies (1987); Kerry et al. (1992); Zavalaga and Paredes (1997); Costantini et al. (2008) |
| Ultrasonography | Sea turtlesCetaceans | Kemp's Ridley sea turtle (Lepidochelys kempi)Loggerhead sea turtle (C. caretta)Bottlenose dolphin (T. truncatus) | Reproductive conditionSex determination | External, non-invasive, promising toolRequires further validation studiesRequires complete gonadal maturation (follicle size)Not useful for sex determination in immature individuals (sea turtles)Requires specialized equipmentRequires anatomical knowledge for accurate interpretationTime consuming per individual examination | Rostal et al. (1990, 1997); Brook et al. (2000); Brook (2001); Valente et al. (2007); Blanvillain et al. (2008) |
| Mark–recapture monitoring: TaggingPhoto-identification of natural marks | PenguinsSea turtlesCetaceans | Adélie penguin (P. adeliae)Emperor penguin (Aptenodytes forsteri)Magellanic penguin (Spheniscus magellanicus)Blue penguin (Eudyptula minor)Yellow-eyed penguin (Megadyptes antipodes)Humboldt penguin (S. humboldti)African penguin (Spheniscus demersus)Rockhopper penguin (Eudyptes chrysocome)Green sea turtle (Ch. mydas)Loggerhead sea turtle (C. caretta)Hawksbill turtle (Eretmochelys imbricata)Bottlenose dolphin (T. truncatus)Spotted dolphin (Stenella frontalis)Pilot whale (Globicephala melaena)Humpback dolphin (Sousa chinensis)Right whale (Eubalaena australis)Humpback whale (Megaptera novaeangliae)Killer whale (Orsinus orca)Blue whale (Balaenoptera musculus)Fin whale (Balaenoptera physalus)Bryde's whale (Balaenoptera edeni)Minke whale (Balaenoptera acutorostrata)Bowhead whale (Balaenoptera mysticetus)Sperm whale (Physeter macrocephalus)Gray whale (Eschrichtius robustus)Manatee (Trichechus manatus) | Reproductive/breeding cyclesReproductive conditionSex determinationGrowth ratesAge at sexual maturityAge class determinationAge at fist pregnancy/birthFecundity rateReproductive successSurvival and reproductive probability estimatesCopulation, incubation and attendance pattern behavioursMigratory routes and periodicity between habitatsPhilopatry and site fidelityPopulation size/rate changePopulation identity/subunit and family group identificationFeeding and breeding habitats | Long-term monitoring series (years)High economic costTagging: Absence of suitable tags for specific age classes Tagging is dependent on field conditions Accessibility to habitats (feeding grounds)Tagging confined to specific: Age classes Sex Life stages/size distributionLow rate of recapturesTag lossPhoto-identification: Changes in marks over time Similar patterns between individuals/twins Lack of clearly defined notch Process of recognition and matching is time consuming Probability of identification error Expensive photographic equipment | Ainley and DeMaster (1980); Ainley et al. (1983); Bjorndal et al. (1983); Carr (1984); Groscolas et al. (1986); Boersma et al. (1990); Dann and Cullen (1990); Darby and Seddon (1990); Hammond (1990); Clapham (1992); Limpus (1992); Green (1993); Balazs (1995, 1999); Crouse and Frazer (1995); Meylan (1995); Chaloupka and Musick (1997); Herzing (1997); Zavalaga and Paredes (1997); Karczmarski and Cockcroft (1998); Crawford et al. (1999); Bjorndal et al. (2000); Seminoff et al. (2002); Grellier et al. (2003); Balazs and Chaloupka (2004); Chaloupka et al. (2004); Kendall et al. (2004); Langtimm et al. (2004); Dugger et al. (2006); Richardson et al. (2006); Koch et al. (2007); Braun-McNeill et al. (2007); Lopez-Castro et al. (2010); Poisbleau et al. (2010) |
| Discriminant functions based on biometric data (seabirds): Bill, foot, wing and vent measurementsVisual examinations
of phenotypical characteristics: Clasper morphology Mean nesting size Presence of secondary sexual characteristics Plastron softness | SharksSeabirdsSea Turtles | Lemon shark (Negaprion brevirostris)Sandbar shark (Carcharhinus plumbeus)Bonnethead sharks (Sphyrna tiburo)Spinner shark (C. brevipinna)Winter skate (Leucoraja ocellata)Thorny skate (Amblyraja radiata)Porbeagle shark (L. nasus)Shortfin mako (I. oxyrinchus)Blue shark (P. glauca)Draughtboard shark (Cephaloscyllium laticeps)Whale shark (Rhincodon typusRoyal penguin (Eudyptes schlegeli)Rockhopper penguin (Eudyptes chrysocome)Magellanic penguin (S. magellanicus)Blue penguin (E. minor)Storm petrel (Oceanodroma furcata)Southern giant petrel (Macronectes giganteus)Great black-backed gull (Larus marinus)American coot (Fulica americana)Green sea turtle (Ch. mydas)Loggerhead sea turtle (C. caretta) | Sex determinationAge class determinationReproductive stageSexual maturity determinationReproductive activity (active breeders vs. inactive sea turtle males) | Non-invasive, external indicatorsInaccuracy in population structure estimates and sexual maturationDiscriminant functions: Requires molecular approaches to validate discriminant functions (seabirds) Depends on: Age class Time of birth Habitat condition (wild/captive) Geographical regionVisual examination: Error in interpretations when used alone Lack of external criteria for both sexes (sharks) Lack of correlation between presence of secondary sexual characteristics and size/age (sea turtles) Population differences Contradictory when compared with sex steroid levels and laparoscopic results Requires further evaluation and validation for determination of sexual maturation | Caldwell (1962); Owens et al. (1978); Boersma and Davies (1987); Kerry et al. (1992); Rasmussen and Gruber (1993); Joung and Chen (1995); Hull (1996); Musick and Limpus (1997); Zavalaga and Paredes (1997); Mawhinney and Diamond (1999); Hickerson (2000); Bertellotti et al. (2002); Gelsleichter et al. (2002); Hocken and Russell (2002); Seminoff et al. (2002, 2003); Setiawan et al. (2004); Casale et al. (2005); Francis and Duffy (2005); Joung et al. (2005); Sulikowski et al. (2005, 2006); Copello et al. (2006); Koch et al. (2007); Norman and Stevens (2007); Awruch et al. (2008a,b); Blanvillain et al. (2008); Lopez-Castro et al. (2010); Poisbleau et al. (2010); Labrada-Martagón et al. (2013) |