| Literature DB >> 27284940 |
Aline Bozec1, Nicole Hannemann2.
Abstract
Considering that adipose tissue (AT) is an endocrine organ, it can influence whole body metabolism. Excessive energy storage leads to the dysregulation of adipocytes, which in turn induces abnormal secretion of adipokines, triggering metabolic syndromes such as obesity, dyslipidemia, hyperglycemia, hyperinsulinemia, insulin resistance and type 2 diabetes. Therefore, investigating the molecular mechanisms behind adipocyte dysregulation could help to develop novel therapeutic strategies. Our protocol describes methods for evaluating the molecular mechanism affected by hypoxic conditions of the AT, which correlates with adipocyte apoptosis in adult mice. This protocol describes how to analyze AT in vivo through gene expression profiling as well as histological analysis of adipocyte differentiation, proliferation and apoptosis during hypoxia exposure, ascertained through staining of hypoxic cells or HIF-1α protein. Furthermore, in vitro analysis of adipocyte differentiation and its responses to various stimuli completes the characterization of the molecular pathways behind possible adipocyte dysfunction leading to metabolic syndromes.Entities:
Mesh:
Year: 2016 PMID: 27284940 PMCID: PMC4927764 DOI: 10.3791/53822
Source DB: PubMed Journal: J Vis Exp ISSN: 1940-087X Impact factor: 1.355
| Component | Volume µl / reaction |
| 10x RT Buffer | 2.0 |
| 25x dNTP Mix (100 mM) | 0.8 |
| 10x RT Random Primers | 2.0 |
| MultiScribe Reverse Transcriptase | 1.0 |
| Nuclease-free H2O | 4.2 |
| 1 µg RNA | 10 |
| Total per reaction | 20 |
| Official full name | Symbol | Sequence 3´--> 5´ | ||
| Forward | Reverse | |||
| Adipogenesis | Delta-like 1 homolog (pref-1) | Dlk1 | GACACTCGAAGCTCA CCTGG | GGAAGGCTGGGACGG GAAAT |
| Early B cell factor 1 | Ebf1 | CCACCATCGACTACGG CTTC | TCCTGGTTGTTGTGGGG CATC | |
| Zinc finger protein 423 | Zfp423 | GTGCCCAGGAAGAAGA CGTA | GGCGACGTGGATCTGA ATCT | |
| Fatty acid binding protein 4 (Ap2) | Fabp4 | TCACCTGGAAGACAGCT CCTC | AAGCCCACTCCCACTTC TTTC | |
| CCAAT/enhancer binding protein (C/EBP), alpha | Cebpa | AAGAGCCGCGACA AGGC | GTCAGCTCCAGCACCT TGTG | |
| CCAAT/enhancer binding protein (C/EBP), beta | Cebpb | TTTCGGGACTTGATGC AATC | CCGCAGGAACATCTTT AAGG | |
| cAMP responsive element binding protein 1 | Creb1 | ACTCAGCCGGGTACT ACCAT | TTGCTGCCTCCCTGTT CTTC | |
| CCAAT/enhancer binding protein (C/EBP), delta | Cebpd | CAGCGCCTACATTGAC TCCA | GTTGAAGAGGTCGGCG AAGA | |
| Kruppel-like factor 4 | Klf4 | GCAGTCACAAGTCCCC TCTC | TAGTCACAAGTGTGGG TGGC | |
| Early growth response 2 (Krox20) | Egr2 | AGGCGGTAGACAAAATC CCAG | GATACGGGAGATCCAG GGGT | |
| Peroxisome proliferator activated receptor gamma | Pparg | AGAGGTCCACAGAGCTG ATTC | GATGCACTGCCTATGAGC ACTT | |
| Lipogenesis | Acetyl-Coenzyme A carboxylase alpha | Acaca | TGGGGACCTTGTCTTCA TCAT | ATGGGCGGAATGGTCTC TTTC |
| Fatty acid synthase | Fasn | ACATCCTAGGCATCC GAGA | CCGAGTTGAGCTGGGT TAGG | |
| Stearoyl-Coenzyme A desaturase 1 | Scd1 | CGGGATTGAATGTTCTTG TCGT | TTCTTGCGATACACTCTG GTGC | |
| Lipolysis | Patatin-like phospholipase domain containing 2 | Pnpla2 | AAGGACCTGATGACCA CCCT | CCAACAAGCGGATGGT GAAG |
| Fatty acid uptake | Lipoprotein lipase | Lpl | GTATCGGGCCCAGCAA CATTATCC | GCCTTGCTGGGGTTTTC TTCATTC |
| CD36 antigen | Cd36 | GTCTTCCCAATAAGCATGT CTCC | ATGGGCTGTGATCGGA ACTG | |
| Hypoxia | Hypoxia inducible factor 1, alpha subunit | Hif1a | CCTGCACTGAATCAAGAG GTGC | CCATCAGAAGGACTTGCT GGCT |
| Endothelial PAS domain protein 1 (also known as: HIF-2alpha) | Epas1 | CAAGCTGAAGCTAAAG CGGC | TTGGGTGAATTCATCG GGGG | |
| Von Hippel-Lindau tumor suppressor | Vhl | ACCGAGGTCATCTTTG GCTC | TTCCGCACACTTGGGT AGTC | |
| Aryl hydrocarbon receptor nuclear translocator (also known as: HIF-1beta) | Arnt | TGGGTCATCTTCTCGC GGTT | TGTCCTATCTGAGCAT CGTG |
| Step | Temperature (°C) | Time (min:sec) | ||
| Polymerase activation | Hold | 95 | 10:00 | |
| PCR | 40 cycles | Denaturize | 95 | 0:15 |
| Annealing/Extension | 60 | 1:00 | ||
| Melting curve | 60 to 95 | 0.5 °C/sec |
| Stock concentration | dilution | |
| Apoptosis | Cleaved Caspase-3 (Asp175) (5A1E) Rabbit mAb | 1:2,000 |
| Proliferation | Purified Mouse Anti-Human Ki-67 Clone B56 (RUO) | 1:50 |
| Hypoxia | HIF-1 alpha Antibody | 1:100 |
| FITC-MAb1 | 1:100 |
| Antibody | dilution |
| biotinylated anti mouse IgG (H+L) | 1:200 |
| biotinylated anti mouse IgG (H+L) | 1:200 |
| HRP conjugates rabbit anti-FITC | 1:100 |