Literature DB >> 27284787

Chemically Accurate Simulation of a Polyatomic Molecule-Metal Surface Reaction.

Francesco Nattino1, Davide Migliorini1, Geert-Jan Kroes1, Eric Dombrowski2, Eric A High2, Daniel R Killelea3, Arthur L Utz2.   

Abstract

Although important to heterogeneous catalysis, the ability to accurately model reactions of polyatomic molecules with metal surfaces has not kept pace with developments in gas phase dynamics. Partnering the specific reaction parameter (SRP) approach to density functional theory with ab initio molecular dynamics (AIMD) extends our ability to model reactions with metals with quantitative accuracy from only the lightest reactant, H2, to essentially all molecules. This is demonstrated with AIMD calculations on CHD3 + Ni(111) in which the SRP functional is fitted to supersonic beam experiments, and validated by showing that AIMD with the resulting functional reproduces initial-state selected sticking measurements with chemical accuracy (4.2 kJ/mol ≈ 1 kcal/mol). The need for only semilocal exchange makes our scheme computationally tractable for dissociation on transition metals.

Entities:  

Year:  2016        PMID: 27284787      PMCID: PMC4939468          DOI: 10.1021/acs.jpclett.6b01022

Source DB:  PubMed          Journal:  J Phys Chem Lett        ISSN: 1948-7185            Impact factor:   6.475


The ability to model bond cleavage and formation is central to chemistry. The high accuracy of ab initio methods has enabled quantitatively accurate descriptions of bimolecular gas phase reactions involving polyatomic molecules.[1,2] However, for reactions of molecules on metal surfaces the need for a simultaneously accurate description of the molecule and the metal poses notorious challenges to both density functional theory (DFT)[3] and ab initio[4,5] electronic structure methods. As a result, dynamics calculations on dissociative chemisorption reactions of polyatomic molecules[6−13] generally achieve only semiquantitative agreement with experiments. The sketched state of affairs is unfortunate, as accurate theoretical data for surface reactions representing rate limiting steps could help with modeling heterogeneously catalyzed reactions more accurately[14] than now possible.[15] Present hurdles to theoretical progress with reactions of polyatomic molecules with metals are both computational and experimental. The only computationally tractable electronic structure theory applicable within a dynamics framework is DFT at the gradient and meta-gradient approximation levels.[16] Benchmark studies of gas phase reactions suggest that the corresponding functionals are not capable of predicting reaction barriers with chemical accuracy[16,17] (1 kcal/mol ≈ 4.2 kJ/mol). In dynamics, the accurate description of surface reactions involving molecules heavier than H2 necessitates modeling effects of surface atom vibrations, which may modulate the reaction barrier height[7] or mediate energy transfer between molecular and surface motion.[18] Experiments useful[16] for quantitative comparison with theory were often performed under conditions that require quantum dynamics for an accurate description.[6,19−22] To be feasible, such simulations still require drastic approximations including the neglect[6,8] or approximate[10,11] modeling of degrees of freedom important to the reaction. As an example of a polyatomic molecule-metal surface reaction, dissociative chemisorption of methane is interesting for practical and fundamental reasons. Its dissociation on catalytic Ni surfaces is a rate-determining step in the current commercial process for hydrogen production (steam reforming[23]). Methane + metal surface systems represent important models for identifying reactivity patterns unique to polyatomic reagents.[19−22,24] For instance, the reaction in methane + Ni and the very similar[11] methane + Pt systems is nonstatistical: the reaction probability depends sensitively on the identity of methane’s vibrational state and not just on the total available energy.[19,20,24] The reactivity of partially deuterated methane, CHD3, is bond selective: pre-exciting one quantum of the ν1 C–H stretch vibration can lead to a 100-fold increase in the ratio of C–H to C–D bond cleavage reaction products on Ni(111).[22] To demonstrate a novel, joint theoretical-experimental approach to accurately model reactions of polyatomic molecules on metals, we select the CHD3 + Ni(111) system, and proceed as follows. First, experiments are done to measure an observable that is sensitive to the reaction barrier height in our specific system. We select conditions that ensure that the quasi-classical trajectory (QCT) method, which we use in the Ab Initio Molecular Dynamics (AIMD), enables an accurate comparison.[9] Specifically, we perform supersonic molecular beam measurements[25] of the probability that CHD3 reacts with Ni(111) for conditions (incidence energy E, vibrational energy) such that reaction occurs in the “over the barrier” energy regime. The experiments use beams seeded with H2, allowing high E (up to 160 kJ/mol) to be achieved with the lowest possible nozzle temperature T (≤900 K), so that the experiments probe the reactivity of CHD3 in its vibrational ground state as much as possible. The experiments are done for a surface temperature (T, 550 K) that exceeds the surface Debye temperature of Ni(111) (370 ± 5K[26]), so that energy exchange with the surface phonons is in the classical regime. The measured “laser-off” reaction probabilities (S0off) are plotted in Figure .
Figure 1

Comparison of calculated and experimental reaction probabilities. The blue and red dashed lines are fits to the corresponding experimental values (solid circles) for S0off and S0. AIMD results appear as open symbols. Numbers indicate the horizontal offsets (in kJ/mol) between the computed reaction probabilities and the fitted experimental S0 curves. Error bars represent 68% confidence intervals. One AIMD result for a frozen surface (AIMDFS) is added for laser-off reaction at 112 kJ/mol (open purple triangle).

Comparison of calculated and experimental reaction probabilities. The blue and red dashed lines are fits to the corresponding experimental values (solid circles) for S0off and S0. AIMD results appear as open symbols. Numbers indicate the horizontal offsets (in kJ/mol) between the computed reaction probabilities and the fitted experimental S0 curves. Error bars represent 68% confidence intervals. One AIMD result for a frozen surface (AIMDFS) is added for laser-off reaction at 112 kJ/mol (open purple triangle). Next, we perform calculations using AIMD,[9,27] with the forces directly obtained from DFT using a specific reaction parameter (SRP) functional,[28] employing the ab initio total-energy and molecular-dynamics program VASP.[29,30] Crucially, AIMD allows the modeling of surface atom motion that may facilitate dissociative chemisorption or hinder it,[7,18] in addition to the motion in all molecular degrees of freedom. In the spirit of SRP–DFT,[28,31] an adjustable exchange-correlation functional is usedHere, ECvdW–DF is a nonlocal, nonempirical correlation functional that also describes the dispersion van der Waals forces.[32] The exchange functional EX is interpolated between the exchange parts of two functionals on which the same physical constraints have been imposed, that is, the general purpose PBE[33] functional, and the RPBE functional that is more adept at describing chemisorption on metals.[34] Previous experience with other systems suggests that this interpolation allows an accurate description of the height of the barrier for dissociative chemisorption on late transition metals, with the added bonus of an improved description of the van der Waals forces. We fit the SRP functional (x in eq ) to the “laser-off” experiments, requiring that the computed S0off reproduce the measured values at E just above the classical threshold. With the T used (550–650 K), at these E (between 101 and 121 kJ/mol) the molecules are predominantly in the ground vibrational state (population ≥ 60%), which should make a quasiclassical description accurate. A trial and error procedure results in good agreement with experiment (see Figure ) for the stated E with x = 0.32, which we use in all subsequent calculations. The lesser agreement with the data for higher E does not invalidate the functional: We argue that classical mechanics might not properly account for surface induced quasi-resonant energy transfer among the C–D bonds in the vibrationally excited molecules, which make up more than 40% of the beam’s population at these E. To validate the fitted functional, we measure and compute initial state-selected reaction probabilities, for the CH-stretch vibration laser excited with one quantum (ν1 = 1, “laser-on” experiments). Quantitative agreement is obtained (Figure ), as seen using two different methods to assess accuracy. In method 1, which can be motivated on the basis of a classical hole model,[31] we measure the displacements along the energy axis between the computed S0 and S-shaped S0 curves fitted to the experiments. Because the displacements are less than 4.2 kJ/mol for four out of five data points (Figure ), we say that the calculations reproduce the measurements for ν1 = 1 with chemical accuracy. We attribute the observation of a slightly larger displacement for one data point (4.5 kJ/mol for E = 121 kJ/mol) to statistical error; shifting down this computed point by one σ reduces the difference to much less than 4.2 kJ/mol, and such a fluctuation may be expected for one out of five data points. In method 2, which takes such statistical fluctuations into account, we test the null hypothesis that the computed S0 are, within statistical uncertainties, equal to the measured ones, using a Stouffer’s Z-score test.[35] Application of this test to the ν1 = 1 data shows that this hypothesis can be accepted with a p-value of 0.47; one would normally only reject this hypothesis if the p value would be less than 0.05. We attribute the success of the SRP functional to accurately describe experiments probing the barrier geometry, the barrier height, and its dependence on the molecule’s impact site and orientation to two facts. First, we interpolate between exchange functionals to ensure an accurate description of experiments sensitive to the minimum reaction barrier height. Second, taking the weighted average of these functionals ensures that the resulting functional is soundly based on the same physical principles used to construct the individual functionals.[32−34] As a result, the SRP functional also correctly predicts the extent to which vibrational pre-excitation of the CH-stretch vibration promotes reaction, and reproduces the state-selected experiments over a wide range of incidence energies. Application of Polanyi’s rules[36] and of the hole model[31] then suggests that the SRP functional correctly describes the CH bond distance at the barrier and the dependence of the molecule surface interaction on the molecule’s point of impact on, and/or its orientation relative to the surface. We also use the hole model to argue[31] that the minimum barrier height E extractable with the SRP functional exhibits chemical accuracy if the computed and measured reaction probability curves agree to within 4.2 kJ/mol. Using the climbing image nudged elastic band (CINEB) method to identify the transition state we find that Eb = 97.9 kJ/mol for methane interacting with a cold, undistorted Ni(111) surface (Figure ).
Figure 2

Coordinates, transition state geometry, and potential energy surface for CHD3 dissociation on Ni(111). (A) In the transition state, ZC is the distance from the C atom to the surface (2.18 Å) and rCH the C–H distance of the dissociating bond (1.61 Å). The dissociating CH bond is oriented at angle θ = 136°, and the principal axis of the methyl fragment at angle β = 165° with respect to the surface normal. (B) Two dimensional cut of the potential energy surface as a function of Z and rCH following minimization with respect to all other molecular degrees of freedom. Insets illustrate the reactant state, the transition state, and the separated products.

Coordinates, transition state geometry, and potential energy surface for CHD3 dissociation on Ni(111). (A) In the transition state, ZC is the distance from the C atom to the surface (2.18 Å) and rCH the C–H distance of the dissociating bond (1.61 Å). The dissociating CH bond is oriented at angle θ = 136°, and the principal axis of the methyl fragment at angle β = 165° with respect to the surface normal. (B) Two dimensional cut of the potential energy surface as a function of Z and rCH following minimization with respect to all other molecular degrees of freedom. Insets illustrate the reactant state, the transition state, and the separated products. With AIMD one can explore features of the reaction dynamics without pre-existing biases of reduced dimensionality calculations. For similar S0 (S0 ≈ 0.03), reaction on Ni(111) occurs at a wide range of impact sites (Figure A), whereas CHD3 reacts only near on-top sites[9] in the very similar[11] methane + Pt(111) system (Figure B). These findings have implications for the dynamical treatment of the azimuthal ϕ-rotation of the molecule around the surface normal (Figure ). At the on-top site, the interaction potential shows little dependence on ϕ.[37]Figure B then suggests that approximations neglecting this dependence[8] should work well for Pt(111) at low E. A more accurate treatment (sudden, i.e., with simple averaging over ϕ,[12,38] or fully coupled dynamics[38]) should be used for Ni(111), for which reaction also occurs at other sites (Figure A), where the molecule–surface interaction varies greatly with ϕ.[12] Very recent work on CH4 + Ni(111) indeed shows that fully azimuthally coupled results differ considerably from results of calculations performed for a single value of ϕ, even if the results are averaged over impact sites.[38]
Figure 3

Impact sites and molecular orientation in collisions of CHD3 with Ni(111) and Pt(111). (A,B) Initial distribution of impact sites for reacting (red circles) and scattering (white circles) molecules above Ni(111) at E = 112.3 kJ/mol (A) and Pt(111) at E = 75.4 kJ/mol[9] (B). Blue circles indicate first layer atoms in ideal positions. (C) Molecular orientation of reactive trajectories for CHD3 + Ni(111) at E = 112.3 kJ/mol, showing the angle β defined in Figure (blue traces). Dashed (solid) traces represent the orientation at time zero (at the time of reaction). The dotted line illustrates random uniform sampling.

Impact sites and molecular orientation in collisions of CHD3 with Ni(111) and Pt(111). (A,B) Initial distribution of impact sites for reacting (red circles) and scattering (white circles) molecules above Ni(111) at E = 112.3 kJ/mol (A) and Pt(111) at E = 75.4 kJ/mol[9] (B). Blue circles indicate first layer atoms in ideal positions. (C) Molecular orientation of reactive trajectories for CHD3 + Ni(111) at E = 112.3 kJ/mol, showing the angle β defined in Figure (blue traces). Dashed (solid) traces represent the orientation at time zero (at the time of reaction). The dotted line illustrates random uniform sampling. In a similar vein, the AIMD calculations show that the β angle between the umbrella axis of reacting CHD3 and the surface normal (Figure ) changes considerably on approaching the surface for E = 112.3 kJ/mol (Figure C), as in reaction on Pt(111).[39] Sudden approximations to the associated tumbling rotation should then be inaccurate. Our results for Ni(111) confirm findings for Pt(111)[9] that the rotations can not be treated with the rotationally adiabatic approximation,[11] which would only hold if the initial β distribution of reacting methane would roughly equal the uniform sampling sin β distribution in Figure C. Finally, our AIMD calculations impart thermal motion to all surface atoms and allow them to respond to the incoming molecule. We gain unique insight into the role of surface atom motion by comparing our results with AIMD calculations in which the surface is kept frozen at its ideal 0K configuration (AIMDFS, see Figure ). Comparison of the AIMD and AIMDFS results at E = 112 kJ/mol suggests that when reaction occurs in the classical, over the barrier regime, surface motion hinders rather than promotes reaction. This is consistent with earlier results of Nave and Jackson for CH4 on Ni(111)[40] and can be attributed to reaction being hindered by surface recoil at high E. Although we used state-resolved reactivity measurements to validate the SRP functional, other experiments can also be used for validation. In principle the SRP–DFT–AIMD approach should be applicable to any molecule reacting with a metal surface, as long as experiments can be devised on the system that are amenable to an accurate quasiclassical dynamical treatment. The present work and previous experience suggest that accurate results are attainable for molecules dissociating on transition metals with SRP functionals containing semilocal exchange (eq ), making our scheme widely applicable. This is not self-evident: DFT studies show that GGA functionals like PBE and RPBE systematically underestimate barrier heights of a wide variety of gas phase reactions.[41] This failure has been attributed to gradient corrected functionals predicting too low energies for transition states in which electrons delocalize over the nuclei involved in the reaction.[42] Assuming the essential ideas underlying this explanation to be correct, the good performance of these functionals for dissociation on transition metals can be explained as follows: although the GGA description of the delocalization of the electrons in the breaking molecular bond should overstabilize the transition state, the localization of two electrons coming from the metal in the emerging metal-molecular fragment bonds apparently cancels this effect. Additional research is needed to provide this explanation with a firm theoretical basis. The dynamical insights and SRP functional extracted for specific polyatomic molecule-metal surface systems can help to test and guide the design of quantum dynamical methods for these systems.[6−12] Provided that enough degrees of freedom are modeled and that any dynamical approximations are sufficiently accurate, quantum dynamics calculations using a PES based on converged DFT calculations with our SRP functional should reproduce measured sticking probabilities for methane + Ni(111). The reaction barriers extractable for such systems with our approach can be used to benchmark[16] electronic structure methods holding promise for achieving chemical accuracy for the systems of interest in future.[4,5] Finally, extension to reactions affected by nonadiabatic effects,[43] like electron–hole pair excitation, should be possible by combining the SRP approach with AIMD with electronic friction (AIMDEF).[44] Here, we have taken the step of advancing from a semiquantitatively to a quantitatively accurate computational description of the activated reaction of a polyatomic molecule with a metal surface. Pairing the SRP approach to DFT[28] with AIMD[9,27] extends our ability to model reactions with metal surfaces with quantitative accuracy from only the lightest reactant, H2,[31] to essentially all reactant molecules. We have demonstrated this with AIMD calculations on CHD3 + Ni(111) in which the SRP functional has been fitted to supersonic molecular beam experiments and validated by showing that AIMD with the resulting functional reproduces measured initial-state selected reaction probabilities with chemical accuracy over a large range of E. The present work and previous experience suggest that the SRP–DFT–AIMD scheme can be applied to molecules dissociating on transition metals in a computationally efficient manner, using semilocal exchange only, and an explanation has been offered for this surprising finding.
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3.  Bond-selective control of a heterogeneously catalyzed reaction.

Authors:  Daniel R Killelea; Victoria L Campbell; Nicholas S Shuman; Arthur L Utz
Journal:  Science       Date:  2008-02-08       Impact factor: 47.728

4.  Insights into current limitations of density functional theory.

Authors:  Aron J Cohen; Paula Mori-Sánchez; Weitao Yang
Journal:  Science       Date:  2008-08-08       Impact factor: 47.728

5.  Some concepts in reaction dynamics.

Authors:  J C Polanyi
Journal:  Science       Date:  1987-05-08       Impact factor: 47.728

Review 6.  The dynamics of molecular interactions and chemical reactions at metal surfaces: testing the foundations of theory.

Authors:  Kai Golibrzuch; Nils Bartels; Daniel J Auerbach; Alec M Wodtke
Journal:  Annu Rev Phys Chem       Date:  2015-01-12       Impact factor: 12.703

7.  Catalysis. Assessing the reliability of calculated catalytic ammonia synthesis rates.

Authors:  Andrew J Medford; Jess Wellendorff; Aleksandra Vojvodic; Felix Studt; Frank Abild-Pedersen; Karsten W Jacobsen; Thomas Bligaard; Jens K Nørskov
Journal:  Science       Date:  2014-07-11       Impact factor: 47.728

8.  Quest for a universal density functional: the accuracy of density functionals across a broad spectrum of databases in chemistry and physics.

Authors:  Roberto Peverati; Donald G Truhlar
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2014-02-10       Impact factor: 4.226

9.  Electronic friction dominates hydrogen hot-atom relaxation on Pd(100).

Authors:  M Blanco-Rey; J I Juaristi; R Díez Muiño; H F Busnengo; G J Kroes; M Alducin
Journal:  Phys Rev Lett       Date:  2014-03-14       Impact factor: 9.161

10.  Origin of the energy barrier to chemical reactions of O2 on Al(111): evidence for charge transfer, not spin selection.

Authors:  Florian Libisch; Chen Huang; Peilin Liao; Michele Pavone; Emily A Carter
Journal:  Phys Rev Lett       Date:  2012-11-08       Impact factor: 9.161

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Authors:  Egidius W F Smeets; Geert-Jan Kroes
Journal:  J Phys Chem C Nanomater Interfaces       Date:  2021-04-21       Impact factor: 4.126

2.  Surface Reaction Barriometry: Methane Dissociation on Flat and Stepped Transition-Metal Surfaces.

Authors:  Davide Migliorini; Helen Chadwick; Francesco Nattino; Ana Gutiérrez-González; Eric Dombrowski; Eric A High; Han Guo; Arthur L Utz; Bret Jackson; Rainer D Beck; Geert-Jan Kroes
Journal:  J Phys Chem Lett       Date:  2017-08-22       Impact factor: 6.475

3.  Accurate Neural Network Description of Surface Phonons in Reactive Gas-Surface Dynamics: N2 + Ru(0001).

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4.  Incident Angle Dependence of CHD3 Dissociation on the Stepped Pt(211) Surface.

Authors:  Helen Chadwick; Ana Gutiérrez-González; Davide Migliorini; Rainer D Beck; Geert-Jan Kroes
Journal:  J Phys Chem C Nanomater Interfaces       Date:  2018-07-31       Impact factor: 4.126

5.  Quantum Monte Carlo Calculations on a Benchmark Molecule-Metal Surface Reaction: H2 + Cu(111).

Authors:  Katharina Doblhoff-Dier; Jörg Meyer; Philip E Hoggan; Geert-Jan Kroes
Journal:  J Chem Theory Comput       Date:  2017-06-09       Impact factor: 6.006

6.  Vibrational Excitation of H2 Scattering from Cu(111): Effects of Surface Temperature and of Allowing Energy Exchange with the Surface.

Authors:  Geert-Jan Kroes; J I Juaristi; M Alducin
Journal:  J Phys Chem C Nanomater Interfaces       Date:  2017-06-05       Impact factor: 4.126

7.  Rotational and steric effects in water dissociative chemisorption on Ni(111).

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8.  Test of the Transferability of the Specific Reaction Parameter Functional for H2 + Cu(111) to D2 + Ag(111).

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Journal:  J Phys Chem C Nanomater Interfaces       Date:  2018-09-20       Impact factor: 4.126

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10.  Analysis of Energy Dissipation Channels in a Benchmark System of Activated Dissociation: N2 on Ru(0001).

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Journal:  J Phys Chem C Nanomater Interfaces       Date:  2018-09-20       Impact factor: 4.126

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