Literature DB >> 27284084

ProSAT+: visualizing sequence annotations on 3D structure.

Antonia Stank1, Stefan Richter2, Rebecca C Wade3.   

Abstract

PRO: tein S: tructure A: nnotation T: ool-plus (ProSAT(+)) is a new web server for mapping protein sequence annotations onto a protein structure and visualizing them simultaneously with the structure. ProSAT(+) incorporates many of the features of the preceding ProSAT and ProSAT2 tools but also provides new options for the visualization and sharing of protein annotations. Data are extracted from the UniProt KnowledgeBase, the RCSB PDB and the PDBe SIFTS resource, and visualization is performed using JSmol. User-defined sequence annotations can be added directly to the URL, thus enabling visualization and easy data sharing. ProSAT(+) is available at http://prosat.h-its.org.
© The Author 2016. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.

Keywords:  protein mutation; protein structure; sequence annotation; visualization; web server

Mesh:

Substances:

Year:  2016        PMID: 27284084     DOI: 10.1093/protein/gzw021

Source DB:  PubMed          Journal:  Protein Eng Des Sel        ISSN: 1741-0126            Impact factor:   1.650


  2 in total

1.  TRAPP webserver: predicting protein binding site flexibility and detecting transient binding pockets.

Authors:  Antonia Stank; Daria B Kokh; Max Horn; Elena Sizikova; Rebecca Neil; Joanna Panecka; Stefan Richter; Rebecca C Wade
Journal:  Nucleic Acids Res       Date:  2017-07-03       Impact factor: 16.971

2.  3DBIONOTES v2.0: a web server for the automatic annotation of macromolecular structures.

Authors:  Joan Segura; Ruben Sanchez-Garcia; Marta Martinez; Jesus Cuenca-Alba; Daniel Tabas-Madrid; C O S Sorzano; J M Carazo
Journal:  Bioinformatics       Date:  2017-11-15       Impact factor: 6.937

  2 in total

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