Literature DB >> 27273293

ATLAAS: an automatic decision tree-based learning algorithm for advanced image segmentation in positron emission tomography.

Beatrice Berthon1, Christopher Marshall, Mererid Evans, Emiliano Spezi.   

Abstract

Accurate and reliable tumour delineation on positron emission tomography (PET) is crucial for radiotherapy treatment planning. PET automatic segmentation (PET-AS) eliminates intra- and interobserver variability, but there is currently no consensus on the optimal method to use, as different algorithms appear to perform better for different types of tumours. This work aimed to develop a predictive segmentation model, trained to automatically select and apply the best PET-AS method, according to the tumour characteristics. ATLAAS, the automatic decision tree-based learning algorithm for advanced segmentation is based on supervised machine learning using decision trees. The model includes nine PET-AS methods and was trained on a 100 PET scans with known true contour. A decision tree was built for each PET-AS algorithm to predict its accuracy, quantified using the Dice similarity coefficient (DSC), according to the tumour volume, tumour peak to background SUV ratio and a regional texture metric. The performance of ATLAAS was evaluated for 85 PET scans obtained from fillable and printed subresolution sandwich phantoms. ATLAAS showed excellent accuracy across a wide range of phantom data and predicted the best or near-best segmentation algorithm in 93% of cases. ATLAAS outperformed all single PET-AS methods on fillable phantom data with a DSC of 0.881, while the DSC for H&N phantom data was 0.819. DSCs higher than 0.650 were achieved in all cases. ATLAAS is an advanced automatic image segmentation algorithm based on decision tree predictive modelling, which can be trained on images with known true contour, to predict the best PET-AS method when the true contour is unknown. ATLAAS provides robust and accurate image segmentation with potential applications to radiation oncology.

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Year:  2016        PMID: 27273293     DOI: 10.1088/0031-9155/61/13/4855

Source DB:  PubMed          Journal:  Phys Med Biol        ISSN: 0031-9155            Impact factor:   3.609


  17 in total

1.  Classification and evaluation strategies of auto-segmentation approaches for PET: Report of AAPM task group No. 211.

Authors:  Mathieu Hatt; John A Lee; Charles R Schmidtlein; Issam El Naqa; Curtis Caldwell; Elisabetta De Bernardi; Wei Lu; Shiva Das; Xavier Geets; Vincent Gregoire; Robert Jeraj; Michael P MacManus; Osama R Mawlawi; Ursula Nestle; Andrei B Pugachev; Heiko Schöder; Tony Shepherd; Emiliano Spezi; Dimitris Visvikis; Habib Zaidi; Assen S Kirov
Journal:  Med Phys       Date:  2017-05-18       Impact factor: 4.071

2.  The first MICCAI challenge on PET tumor segmentation.

Authors:  Mathieu Hatt; Baptiste Laurent; Anouar Ouahabi; Hadi Fayad; Shan Tan; Laquan Li; Wei Lu; Vincent Jaouen; Clovis Tauber; Jakub Czakon; Filip Drapejkowski; Witold Dyrka; Sorina Camarasu-Pop; Frédéric Cervenansky; Pascal Girard; Tristan Glatard; Michael Kain; Yao Yao; Christian Barillot; Assen Kirov; Dimitris Visvikis
Journal:  Med Image Anal       Date:  2017-12-09       Impact factor: 8.545

3.  Time to Prepare for Risk Adaptation in Lymphoma by Standardizing Measurement of Metabolic Tumor Burden.

Authors:  Sally F Barrington; Michel Meignan
Journal:  J Nucl Med       Date:  2019-04-06       Impact factor: 10.057

4.  Joint Tumor Segmentation in PET-CT Images Using Co-Clustering and Fusion Based on Belief Functions.

Authors:  Chunfeng Lian; Su Ruan; Thierry Denoeux; Hua Li; Pierre Vera
Journal:  IEEE Trans Image Process       Date:  2018-10-05       Impact factor: 10.856

5.  Cyclo-oxygenase-2 expression is associated with mean standardised uptake value on 18F-Fluorodeoxyglucose positron emission tomography in oesophageal adenocarcinoma.

Authors:  Kieran G Foley; Adam Christian; James Peaker; Christopher Marshall; Emiliano Spezi; Howard Kynaston; Ashley Roberts
Journal:  Br J Radiol       Date:  2019-05-08       Impact factor: 3.039

6.  Prediction of lymph node metastases using pre-treatment PET radiomics of the primary tumour in esophageal adenocarcinoma: an external validation study.

Authors:  Chong Zhang; Zhenwei Shi; Petros Kalendralis; Phil Whybra; Craig Parkinson; Maaike Berbee; Emiliano Spezi; Ashley Roberts; Adam Christian; Wyn Lewis; Tom Crosby; Andre Dekker; Leonard Wee; Kieran G Foley
Journal:  Br J Radiol       Date:  2020-12-11       Impact factor: 3.039

Review 7.  Artificial intelligence for molecular neuroimaging.

Authors:  Amanda J Boyle; Vincent C Gaudet; Sandra E Black; Neil Vasdev; Pedro Rosa-Neto; Katherine A Zukotynski
Journal:  Ann Transl Med       Date:  2021-05

8.  Implications of the Harmonization of [18F]FDG-PET/CT Imaging for Response Assessment of Treatment in Radiotherapy Planning.

Authors:  Elisa Jiménez-Ortega; Raquel Agüera; Ana Ureba; Marcin Balcerzyk; Amadeo Wals-Zurita; Francisco Javier García-Gómez; Antonio Leal
Journal:  Tomography       Date:  2022-04-12

9.  Development and validation of a prognostic model incorporating texture analysis derived from standardised segmentation of PET in patients with oesophageal cancer.

Authors:  Kieran G Foley; Robert K Hills; Beatrice Berthon; Christopher Marshall; Craig Parkinson; Wyn G Lewis; Tom D L Crosby; Emiliano Spezi; Stuart Ashley Roberts
Journal:  Eur Radiol       Date:  2017-08-02       Impact factor: 5.315

10.  Interobserver Agreement on Automated Metabolic Tumor Volume Measurements of Deauville Score 4 and 5 Lesions at Interim 18F-FDG PET in Diffuse Large B-Cell Lymphoma.

Authors:  Gerben J C Zwezerijnen; Jakoba J Eertink; Coreline N Burggraaff; Sanne E Wiegers; Ekhlas A I N Shaban; Simone Pieplenbosch; Daniela E Oprea-Lager; Pieternella J Lugtenburg; Otto S Hoekstra; Henrica C W de Vet; Josee M Zijlstra; Ronald Boellaard
Journal:  J Nucl Med       Date:  2021-03-05       Impact factor: 11.082

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